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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044976 ID=TCONS_00044976|Name=TCONS_00044976|organism=Clytia hemisphaerica|type=transcript|length=1681bp
CGAGGATGGTTAAAGTGCTAATTTACCTTCGTCCTCAGTCAATCAGTCAA
GATCTAGACAAATTAGAttcttaccgtctccgtcgcagaaaaacgcACGT
ACAACTCGGTATTACTAGAAAGTCGCATCCAAATNCGAGGATGGTTAAAG
TGCTAATTTACCTTCGTCCTCAGTCAATCAGTCAAGATCTAGACAAATTA
GATTCTTACCGTCTTCGTCGCAGAAAAACGCACGTACAACTCGGTATTAC
TAGAAAGTCGCATCCAAATATATATCTTGTacattattttatgttttagt
ACCCTATTGTGaacttttttaaagcattttcagTATCCTTCATTAATTTT
ATATGGGTATACCCTCAAGCATCGATCAAGacacaaaaatttcattttat
gacCCCAAGTCGGCCTTCTGGGGCCAGCCATGGGTCCTGAAAGTCCAATT
TTGAAAAAGCTATTTTAAATTCTGATTTTACTTACCATAATGAAGTTCTC
CCccaaatttgaagtaaaaagaacaattgtatcaaaagttatggcctaAA
CAAGTTTGCCCGACCcccaaaaaccattaaaattttacaacattttttga
cCAACGAACCCTACATTTGGCCCTGAAAATCATATTAAGCTACCGATTTG
ACCAGTCCACCCGACTAATTTCATAACTAAGATGCCTAAGGATACCAAAA
AACCACCTTAGGCTTACTCCCTTCTCCGGAGCCGAAATGTCAAATTCTGG
GGTCGTAGCTGATGGGCtaatatagaagacttttaaacgggtatagccga
tttcattacctaactcaagataattcacgcagaagatgctatatatggtc
aaatttaaaccaaaatgtggcgaaaagttgaacttgcgcatgaaatatcc
cGAGCtaggtaaggaaatcggctataaccgtttaaaagtgAACACAGTCA
GAAATAAAAGGGGGTTTTGTGACATTTCTACCTTCTGTTATATCTGATAC
CATATCTGATGGAATTTTGAGGTTAccatatcaaaactttgaagAACTCA
TGTATAGAAATTTCTCGTGGATTAAGAAGAAACGCGAATTTAAGAGGTTA
CTTCAATCCTGAGTAATACTTAGAAATATGATGTGGTTAAATTATTTCTG
ACTGTGTTCgctttttttcctacaaacagcctgtatttttgtaacacgac
cacactattaATGNtatttttttcctacaaacagcctgtatttttgtaac
acgaccacactattaATGAAGAGAAAACTTAATACCTGGTAGCAGATTAA
CGAAattcgattgaaattcgattttaAAGGAAGCTTTTGCAGtagagaaa
aataaagaaaaaattctatTAATGAATGACAAGAATagaattgcaaattt
ttgaagAGCTTCTACCACAAATAGATCAGGTAGCTGTTTTTAGTTTGAAA
GATAGACCGTGTttgaatgtcaagaatgtggtaaatcgttttttcacaaa
aataccatctcaaaaaaaataaatcaattgttcatgataaaattgaataa
tttatatgccaagaatgtggtaaatctttttcttcaaaaacaccgAAGAG
CAATCCATGATAAAGCCTTTTGAATGTCAAAACTATGGAAATTCTTTTGG
TGAGAAAGGTTCGTTTAcagaaacatcaaag Run BLAST on NCBI transcript from alignment at sc0006580:6..1686 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044976 ID=TCONS_00044976|Name=TCONS_00044976|organism=Clytia hemisphaerica|type=transcript|length=1681bp|location=Sequence derived from alignment at sc0006580:6..1686 (Clytia hemisphaerica)
ctttgatgtttctgTAAACGAACCTTTCTCACCAAAAGAATTTCCATAGT
TTTGACATTCAAAAGGCTTTATCATGGATTGCTCTTcggtgtttttgaag
aaaaagatttaccacattcttggcatataaattattcaattttatcatga
acaattgatttattttttttgagatggtatttttgtgaaaaaacgattta
ccacattcttgacattcaaACACGGTCTATCTTTCAAACTAAAAACAGCT
ACCTGATCTATTTGTGGTAGAAGCTcttcaaaaatttgcaattctATTCT
TGTCATTCATTAatagaattttttctttatttttctctaCTGCAAAAGCT
TCCTTtaaaatcgaatttcaatcgaatTTCGTTAATCTGCTACCAGGTAT
TAAGTTTTCTCTTCATtaatagtgtggtcgtgttacaaaaatacaggctg
tttgtaggaaaaaaataNCATtaatagtgtggtcgtgttacaaaaataca
ggctgtttgtaggaaaaaaagcGAACACAGTCAGAAATAATTTAACCACA
TCATATTTCTAAGTATTACTCAGGATTGAAGTAACCTCTTAAATTCGCGT
TTCTTCTTAATCCACGAGAAATTTCTATACATGAGTTcttcaaagttttg
atatggTAACCTCAAAATTCCATCAGATATGGTATCAGATATAACAGAAG
GTAGAAATGTCACAAAACCCCCTTTTATTTCTGACTGTGTTcacttttaa
acggttatagccgatttccttacctaGCTCgggatatttcatgcgcaagt
tcaacttttcgccacattttggtttaaatttgaccatatatagcatcttc
tgcgtgaattatcttgagttaggtaatgaaatcggctatacccgtttaaa
agtcttctatattaGCCCATCAGCTACGACCCCAGAATTTGACATTTCGG
CTCCGGAGAAGGGAGTAAGCCTAAGGTGGTTTTTTGGTATCCTTAGGCAT
CTTAGTTATGAAATTAGTCGGGTGGACTGGTCAAATCGGTAGCTTAATAT
GATTTTCAGGGCCAAATGTAGGGTTCGTTGgtcaaaaaatgttgtaaaat
tttaatggtttttgggGGTCGGGCAAACTTGTTtaggccataacttttga
tacaattgttctttttacttcaaatttggGGGAGAACTTCATTATGGTAA
GTAAAATCAGAATTTAAAATAGCTTTTTCAAAATTGGACTTTCAGGACCC
ATGGCTGGCCCCAGAAGGCCGACTTGGGgtcataaaatgaaatttttgtg
tCTTGATCGATGCTTGAGGGTATACCCATATAAAATTAATGAAGGATAct
gaaaatgctttaaaaaagttCACAATAGGGTactaaaacataaaataatg
tACAAGATATATATTTGGATGCGACTTTCTAGTAATACCGAGTTGTACGT
GCGTTTTTCTGCGACGAAGACGGTAAGAATCTAATTTGTCTAGATCTTGA
CTGATTGACTGAGGACGAAGGTAAATTAGCACTTTAACCATCCTCGNATT
TGGATGCGACTTTCTAGTAATACCGAGTTGTACGTgcgtttttctgcgac
ggagacggtaagaaTCTAATTTGTCTAGATCTTGACTGATTGACTGAGGA
CGAAGGTAAATTAGCACTTTAACCATCCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044976-exon-sc0006580-1491911889:6..1686 | TCONS_00044976-exon-sc0006580-1491911889:6..1686 | Clytia hemisphaerica | exon |
| TCONS_00044976-exon-sc0006580-1510915933:6..1686 | TCONS_00044976-exon-sc0006580-1510915933:6..1686 | Clytia hemisphaerica | exon |
| TCONS_00044976-exon-sc0006580-1575043694:6..1686 | TCONS_00044976-exon-sc0006580-1575043694:6..1686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006580 | supercontig | sc0006580:6..1686 . |
Blast
The following BLAST results are available for this feature:
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