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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044978 ID=TCONS_00044978|Name=TCONS_00044978|organism=Clytia hemisphaerica|type=transcript|length=1574bp
AGTTGCTTAGGTAGTCCCAAGCAATACTGAACATGATCCTAACTCTTccc
gaaaaagaaaaaagaaacccAGGTACTTGCCCTCTAGCAGCCAATCCTAA
CCAGAGATCCCCCACACCCAACAAAAAATTAACCCCCCATAAAAACTCAG
TTATTGACCCCAAGTTAGTTTCAAAGTTCAGTGCTATTGCTCAAGATAGG
TAAGTGTTGggtaattatttgaaaaaaagatcatCATTAAATCGCCAAAT
TCCCCAATTTTCCATGCAATTCCTAGGTATACCTGATTTACATCGGTTTC
TAGCAATTGTGAGGAAGTGTTCTATTTGTGTGATTTTGCCCAATTGCTCG
AATTCACCACTCTCGTTTGAATCAGAGTACTCAAGGAAGTCCTCCATTTC
TTTGGCGAAGTGGGATATATTGGCCTCAGAGTTTTGTATTCCGTGTTGTT
CTCGAACTGTTGATAGTATGTGCATCAGGGATGCCCATTCCGTCTTATTA
AGATAGTGAGACCATGCAACGTGACCGTATATCTGTGGAGTGAGTATTGT
TCGATCCCAGTCATCCATGCTTGGTGTCGGCTTACCGTTGTAGTGTTGGT
TTCTATCATTATAGTAAGACGAAAAATTGTTCTTCATCGAAGTTGGTTTG
TACATTGGAATTAAACCGTTAGAGTCTCCTTCCACTGTGGTGATTGGTGT
TCGTAATTCTCCAGTTGACGTTGTTTTTGTCTTTGTTTTGGATTTAGATT
TTGATGGGGTTTGAACTGGGACCTCTGGATTAGAAGTCTGTTTCGCTGCC
GATTGCGCCACTGATCCTTGGTTTGAATTGGTTTTCATTGGAGTTGTTTG
GACTTTTGGACGTTTGGAATGATCATTTGGTTTGTCAACTTCCATTGGGC
TTTGTACCCTGTTCCCACCTACTGGAACCTTTTTCTGCTGGATAGTTGAT
GTGGATTTTGTTGGTTTGTCAACTTCCATTGGAGGCACACCCTCCTGGCT
TGTTGATGTGGTTTTTATTTGAtatacaatttttgtttttatttctccTT
TACTCTGGGGCTGAGATAAAGGAGGGGGATTGGATTCTGATGATCTAGTT
GGTACCACTCGTTTTAACATTTCGGCGTTGTCAAATACGGTTGTGATATA
GATGTTCTCACAGAGGGCAGAGTTCTTTGTTGAGATGTGATTAGGGAGCT
GTTCGTAGAATTGCTTGAAGTGGATCTGCCAATTGCCATTTCGATAGCTG
ATGTCCCTATACTTTTTCATTGTAGCGTTGACTTTGAGGACTTTTCCATA
AGTTGAAAAGATGGCAATGACGTCATCCTTTGTTAACTCGATTGGAATTC
CTTGTGCTGTCACCACAAGTGGTTTAGCTTCGACGGGATCGAGAAAGCCA
CGCTTGAGTAGATGTTGTTTTGCTTCCAAACTTTCGAGGTGAACGTATGT
TCGCTTGAGAGATCTTGTAACAGCGACGACGTCTTTTCCAACACCACAGT
CGATTGCCGCATCGAGGACGCTTTCGACGGCGTAACGATCGGGTAGATAT
ACTGCCAACGCATTCAACTTCATT Run BLAST on NCBI protein sequence of TCONS_00044978-protein >TCONS_00044978-protein ID=TCONS_00044978-protein|Name=TCONS_00044978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MKLNALAVYLPDRYAVESVLDAAIDCGVGKDVVAVTRSLKRTYVHLESLE
AKQHLLKRGFLDPVEAKPLVVTAQGIPIELTKDDVIAIFSTYGKVLKVNA
TMKKYRDISYRNGNWQIHFKQFYEQLPNHISTKNSALCENIYITTVFDNA
EMLKRVVPTRSSESNPPPLSQPQSKGEIKTKIVYQIKTTSTSQEGVPPME
VDKPTKSTSTIQQKKVPVGGNRVQSPMEVDKPNDHSKRPKVQTTPMKTNS
NQGSVAQSAAKQTSNPEVPVQTPSKSKSKTKTKTTSTGELRTPITTVEGD
SNGLIPMYKPTSMKNNFSSYYNDRNQHYNGKPTPSMDDWDRTILTPQIYG
HVAWSHYLNKTEWASLMHILSTVREQHGIQNSEANISHFAKEMEDFLEYS
DSNESGEFEQLGKITQIEHFLTIARNRCKSGIPRNCMENWGIWRFNDDLF
FK Run BLAST on NCBI transcript from alignment at sc0006591:2..1575 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044978 ID=TCONS_00044978|Name=TCONS_00044978|organism=Clytia hemisphaerica|type=transcript|length=1574bp|location=Sequence derived from alignment at sc0006591:2..1575 (Clytia hemisphaerica)
AATGAAGTTGAATGCGTTGGCAGTATATCTACCCGATCGTTACGCCGTCG
AAAGCGTCCTCGATGCGGCAATCGACTGTGGTGTTGGAAAAGACGTCGTC
GCTGTTACAAGATCTCTCAAGCGAACATACGTTCACCTCGAAAGTTTGGA
AGCAAAACAACATCTACTCAAGCGTGGCTTTCTCGATCCCGTCGAAGCTA
AACCACTTGTGGTGACAGCACAAGGAATTCCAATCGAGTTAACAAAGGAT
GACGTCATTGCCATCTTTTCAACTTATGGAAAAGTCCTCAAAGTCAACGC
TACAATGAAAAAGTATAGGGACATCAGCTATCGAAATGGCAATTGGCAGA
TCCACTTCAAGCAATTCTACGAACAGCTCCCTAATCACATCTCAACAAAG
AACTCTGCCCTCTGTGAGAACATCTATATCACAACCGTATTTGACAACGC
CGAAATGTTAAAACGAGTGGTACCAACTAGATCATCAGAATCCAATCCCC
CTCCTTTATCTCAGCCCCAGAGTAAAggagaaataaaaacaaaaattgta
taTCAAATAAAAACCACATCAACAAGCCAGGAGGGTGTGCCTCCAATGGA
AGTTGACAAACCAACAAAATCCACATCAACTATCCAGCAGAAAAAGGTTC
CAGTAGGTGGGAACAGGGTACAAAGCCCAATGGAAGTTGACAAACCAAAT
GATCATTCCAAACGTCCAAAAGTCCAAACAACTCCAATGAAAACCAATTC
AAACCAAGGATCAGTGGCGCAATCGGCAGCGAAACAGACTTCTAATCCAG
AGGTCCCAGTTCAAACCCCATCAAAATCTAAATCCAAAACAAAGACAAAA
ACAACGTCAACTGGAGAATTACGAACACCAATCACCACAGTGGAAGGAGA
CTCTAACGGTTTAATTCCAATGTACAAACCAACTTCGATGAAGAACAATT
TTTCGTCTTACTATAATGATAGAAACCAACACTACAACGGTAAGCCGACA
CCAAGCATGGATGACTGGGATCGAACAATACTCACTCCACAGATATACGG
TCACGTTGCATGGTCTCACTATCTTAATAAGACGGAATGGGCATCCCTGA
TGCACATACTATCAACAGTTCGAGAACAACACGGAATACAAAACTCTGAG
GCCAATATATCCCACTTCGCCAAAGAAATGGAGGACTTCCTTGAGTACTC
TGATTCAAACGAGAGTGGTGAATTCGAGCAATTGGGCAAAATCACACAAA
TAGAACACTTCCTCACAATTGCTAGAAACCGATGTAAATCAGGTATACCT
AGGAATTGCATGGAAAATTGGGGAATTTGGCGATTTAATGatgatctttt
tttcaaataattaccCAACACTTACCTATCTTGAGCAATAGCACTGAACT
TTGAAACTAACTTGGGGTCAATAACTGAGTTTTTATGGGGGGTTAATTTT
TTGTTGGGTGTGGGGGATCTCTGGTTAGGATTGGCTGCTAGAGGGCAAGT
ACCTgggtttcttttttctttttcgggAAGAGTTAGGATCATGTTCAGTA
TTGCTTGGGACTACCTAAGCAACT Coding sequence (CDS) from alignment at sc0006591:2..1575 >TCONS_00044978 ID=TCONS_00044978|Name=TCONS_00044978|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0006591:2..1575 (Clytia hemisphaerica)
ATGAAGTTGAATGCGTTGGCAGTATATCTACCCGATCGTTACGCCGTCGA
AAGCGTCCTCGATGCGGCAATCGACTGTGGTGTTGGAAAAGACGTCGTCG
CTGTTACAAGATCTCTCAAGCGAACATACGTTCACCTCGAAAGTTTGGAA
GCAAAACAACATCTACTCAAGCGTGGCTTTCTCGATCCCGTCGAAGCTAA
ACCACTTGTGGTGACAGCACAAGGAATTCCAATCGAGTTAACAAAGGATG
ACGTCATTGCCATCTTTTCAACTTATGGAAAAGTCCTCAAAGTCAACGCT
ACAATGAAAAAGTATAGGGACATCAGCTATCGAAATGGCAATTGGCAGAT
CCACTTCAAGCAATTCTACGAACAGCTCCCTAATCACATCTCAACAAAGA
ACTCTGCCCTCTGTGAGAACATCTATATCACAACCGTATTTGACAACGCC
GAAATGTTAAAACGAGTGGTACCAACTAGATCATCAGAATCCAATCCCCC
TCCTTTATCTCAGCCCCAGAGTAAAggagaaataaaaacaaaaattgtat
aTCAAATAAAAACCACATCAACAAGCCAGGAGGGTGTGCCTCCAATGGAA
GTTGACAAACCAACAAAATCCACATCAACTATCCAGCAGAAAAAGGTTCC
AGTAGGTGGGAACAGGGTACAAAGCCCAATGGAAGTTGACAAACCAAATG
ATCATTCCAAACGTCCAAAAGTCCAAACAACTCCAATGAAAACCAATTCA
AACCAAGGATCAGTGGCGCAATCGGCAGCGAAACAGACTTCTAATCCAGA
GGTCCCAGTTCAAACCCCATCAAAATCTAAATCCAAAACAAAGACAAAAA
CAACGTCAACTGGAGAATTACGAACACCAATCACCACAGTGGAAGGAGAC
TCTAACGGTTTAATTCCAATGTACAAACCAACTTCGATGAAGAACAATTT
TTCGTCTTACTATAATGATAGAAACCAACACTACAACGGTAAGCCGACAC
CAAGCATGGATGACTGGGATCGAACAATACTCACTCCACAGATATACGGT
CACGTTGCATGGTCTCACTATCTTAATAAGACGGAATGGGCATCCCTGAT
GCACATACTATCAACAGTTCGAGAACAACACGGAATACAAAACTCTGAGG
CCAATATATCCCACTTCGCCAAAGAAATGGAGGACTTCCTTGAGTACTCT
GATTCAAACGAGAGTGGTGAATTCGAGCAATTGGGCAAAATCACACAAAT
AGAACACTTCCTCACAATTGCTAGAAACCGATGTAAATCAGGTATACCTA
GGAATTGCATGGAAAATTGGGGAATTTGGCGATTTAATGatgatcttttt
ttcaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044978-exon-sc0006591-1491911889:2..1575 | TCONS_00044978-exon-sc0006591-1491911889:2..1575 | Clytia hemisphaerica | exon |
| TCONS_00044978-exon-sc0006591-1510915933:2..1575 | TCONS_00044978-exon-sc0006591-1510915933:2..1575 | Clytia hemisphaerica | exon |
| TCONS_00044978-exon-sc0006591-1575043694:2..1575 | TCONS_00044978-exon-sc0006591-1575043694:2..1575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006591 | supercontig | sc0006591:2..1575 . |
Blast
The following BLAST results are available for this feature:
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