TCONS_00044988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044988
Unique NameTCONS_00044988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length182

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044988 ID=TCONS_00044988|Name=TCONS_00044988|organism=Clytia hemisphaerica|type=transcript|length=182bp
CATAGGAGCGCATGCGTAGagagaaagaagagaaagagagcTGGGAACGA
AAGATGCGGATGGTTGAACCGAACCACGTGGATTATGTAGGAGATACTTC
TGATAGTGATGATTCCCTTTCTTCAGTTATCATACCAAGCCCTATGCCTT
CAAGATTACCATCAGCTAATAGTACTCTTAGG
Run BLAST on NCBI

transcript from alignment at sc0006619:160..957-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044988 ID=TCONS_00044988|Name=TCONS_00044988|organism=Clytia hemisphaerica|type=transcript|length=798bp|location=Sequence derived from alignment at sc0006619:160..957- (Clytia hemisphaerica)
CATAGGAGCGCATGCGTAGAGAGAAAGAAGAGAAAGAGAGCTGGGAACGA
AAGATGCGGATGGTTGAACCGAACCACGTGGATTATGTAGGAGATACTTC
TGATAGTGATGATTCCCTTTCTTCGTAAGTTTTCATTTTCCTTAATTTTT
TTTGGTTGTAGCCAAATTATCCTAAATTTATTTAAGGGATACCTTATCGG
CCAAAACTTAGTCGGCCTTAATTTTAGTCGGCCTTTATTATTAGTCACCA
AGCCAAAATTTTAGTCACCTCGTCAAATTTAGTCACTAAGGGCCGACTAA
TAATTCTTCGTTAAAGTAATACCGATATGAGAAGTGAGTTAAGGAAAGCT
TAATTATAAACTTTAAATTTGGCCCAAATTTTTAGTCGGCCCAAATTTTA
GTCAGCCCAAATTTTCAGTCGGCCCTAATTTTAGTCACCAACCCAAAATT
TAATCATTTAGGGCCGACTAAGTTTTGGCCGATAAAATTGTTTGAGTACC
AAACCCTGCTCGTATTGTACTCCTAACAATTTGAAGTATAAGAATAAGGT
ATACATAACGCCGAAATATTTCCTAAGACATTCTTCATTATGATATAGAA
GGAAGGCACTCCTCTATGCTGACAAAGCAGAGTAAACAAAAAAAATATCA
CATTTTGTGCTCTAGCGGCGAGGGGAAGGGGAGAGAATTGTTTTTTTTGT
TGTTTAAAAACTGTATATTTATTGAACCTTCTTTCTATAGAGTTATCATA
CCAAGCCCTATGCCTTCAAGATTACCATCAGCTAATAGTACTCTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028579XLOC_028579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044988-exon-sc0006619-1575043694:834..957TCONS_00044988-exon-sc0006619-1575043694:834..957Clytia hemisphaericaexon
TCONS_00044988-exon-sc0006619-1575043694:160..217TCONS_00044988-exon-sc0006619-1575043694:160..217Clytia hemisphaericaexon
TCONS_00044988-exon-sc0006619-1510915933:834..957TCONS_00044988-exon-sc0006619-1510915933:834..957Clytia hemisphaericaexon
TCONS_00044988-exon-sc0006619-1510915933:160..217TCONS_00044988-exon-sc0006619-1510915933:160..217Clytia hemisphaericaexon
TCONS_00044988-exon-sc0006619-1491911889:834..957TCONS_00044988-exon-sc0006619-1491911889:834..957Clytia hemisphaericaexon
TCONS_00044988-exon-sc0006619-1491911889:160..217TCONS_00044988-exon-sc0006619-1491911889:160..217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006619supercontigsc0006619:160..957 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	11.3891	6.62569	2.14369	1.40917	0	0	1.20148	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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