TCONS_00045010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045010
Unique NameTCONS_00045010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045010 ID=TCONS_00045010|Name=TCONS_00045010|organism=Clytia hemisphaerica|type=transcript|length=499bp
TTATAGAAAAGCAGTTAATATTAAGAAAAAAGCAAGATATGATATTCTGA
ATTACCAGCGACTTATTTCAGGAAATATCAAGCATAAACGTCAGTTGTTT
CAAATTACAATGGCATTCAGTAAGAGTCAAGAACAAAGAAGGCAAAGTAA
TACAAGCTCTCTTAGTGCTCTTGAGGATGATCCACTGCTCAGAGATTGTA
TTGGTTTGAGACAAAGGTTGTTGGATACTGAGAAATCACTTCAAAATCTC
ACCATATCGACAGCAACACCAAAGATTTCTCCAAATGATAGTTTGAGAGC
TGCAAGAAATGAAACTGATAAAAGCATTTTATCGGACCATGCTCCTATTC
TAACACTTGCTGACTTAACACCATCTGGAAGTGTAGAGGACACATTGGAT
ACTCACCCATCACACCAAAACTCGAAGCAAGCTCATAATCGCCCTTATTC
CTCCTTGGGTGAGATTGACAGTGGAAAAGCATTTCAGTATGAAAAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00045010-protein

>TCONS_00045010-protein ID=TCONS_00045010-protein|Name=TCONS_00045010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
YRKAVNIKKKARYDILNYQRLISGNIKHKRQLFQITMAFSKSQEQRRQSN
TSSLSALEDDPLLRDCIGLRQRLLDTEKSLQNLTISTATPKISPNDSLRA
ARNETDKSILSDHAPILTLADLTPSGSVEDTLDTHPSHQNSKQAHNRPYS
SLGEIDSGKAFQYEKV
Run BLAST on NCBI

transcript from alignment at sc0006674:105..967-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045010 ID=TCONS_00045010|Name=TCONS_00045010|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at sc0006674:105..967- (Clytia hemisphaerica)
TTATAGAAAAGCAGTTAATATTAAGAAAAAAGCAAGATATGATATTCTGA
ATTACCAGCGACTTATTTCAGGAAATATCAAGCATAAACGTCAGTTGTTT
CAAATTACAATGGCATTCAGTAAGAGTCAAGAACAAAGAAGGCAAAGTAA
TACAAGCTCTCTTAGTGCTCTTGAGGATGATCCACTGCTCAGAGATTGTA
TTGGTTTGAGACAAAGGTTGTTGGATACTGAGAAATCACTTCAAAATCTC
ACCATATCGACAGCAACACCAAAGATTTCTCCAAATGATAGTTTGAGGTA
TAACTTTTTCATTTGTGAATTTGTTTTGTACCTTATAAGAATGTATTATT
ATGATAATGAAGATGTGTCTGTGTGTTTAAGACTTTTTCAACATAATTGT
TAGATCCATTTGTCTTAATAAATCTTACCCTCTTTGCATGATTTCGCAAA
AAAAGATTTTTATTGCTATTGACTTTGTCTTTTTGCAATTGCAAATTTAC
AGAATTTTTTTCCCATCTTATTATGCTTTGTAGAGCTGCAAGAAATGAAA
CTGATAAAAGCATTTTATCGGACCATGCTCCTNATTTTTATTGCTATTGA
CTTTGTCTTTTTGCAATTGCAAATTTACAGAATTTTTTTCCCATCTTATT
ATGCTTTGTAGAGCTGCAAGAAATGAAACTGATAAAAGCATTTTATCGGA
CCATGCTCCTATTCTAACACTTGCTGACTTAACACCATCTGGAAGTGTAG
AGGACACATTGGATACTCACCCATCACACCAAAACTCGAAGCAAGCTCAT
AATCGCCCTTATTCCTCCTTGGGTGAGATTGACAGTGGAAAAGCATTTCA
GTATGAAAAGGTA

Coding sequence (CDS) from alignment at sc0006674:105..967-

>TCONS_00045010 ID=TCONS_00045010|Name=TCONS_00045010|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0006674:105..967- (Clytia hemisphaerica)
AGCTGCAAGAAATGAAACTGATAAAAGCATTTTATCGGACCATGCTCCTA
TTCTAACACTTGCTGACTTAACACCATCTGGAAGTGTAGAGGACACATTG
GATACTCACCCATCACACCAAAACTCGAAGCAAGCTCATAATCGCCCTTA
TTCCTCCTTGGGTGAGATTGACAGTGGAAAAGCATTTCAGTATGAAAAGG
TATATAGAAAAGCAGTTAATATTAAGAAAAAAGCAAGATATGATATTCTG
AATTACCAGCGACTTATTTCAGGAAATATCAAGCATAAACGTCAGTTGTT
TCAAATTACAATGGCATTCAGTAAGAGTCAAGAACAAAGAAGGCAAAGTA
ATACAAGCTCTCTTAGTGCTCTTGAGGATGATCCACTGCTCAGAGATTGT
ATTGGTTTGAGACAAAGGTTGTTGGATACTGAGAAATCACTTCAAAATCT
CACCATATCGACAGCAACACCAAAGATTTCTCCAAATGATAGTTTGAGAG
CTGCAAGAAATGAAACTGATAAAAGCATTTTATCGGACCATGCTCCTATT
CTAACACTTGCTGACTTAACACCATCTGGAAGTGTAGAGGACACATTGGA
TACTCACCCATCACACCAAAACTCGAAGCAAGCTCATAATCGCCCTTATT
CCTCCTTGGGTGAGATTGACAGTGGAAAAGCATTTCAGTATGAAAAGGTA
TATAGAAAAGCAGTTAATATTAAGAAAAAAGCAAGATATGATATTCTGAA
TTACCAGCGACTTATTTCAGGAAATATCAAGCATAAACGTCAGTTGTTTC
AAATTACAATGGCATTCAGTAAGAGTCAAGAACAAAGAAGGCAAAGTAAT
ACAAGCTCTCTTAGTGCTCTTGAGGATGATCCACTGCTCAGAGATTGTAT
TGGTTTGAGACAAAGGTTGTTGGATACTGAGAAATCACTTCAAAATCTCA
CCATATCGACAGCAACACCAAAGATTTCTCCAAATGATAGTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028601XLOC_028601Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045010-proteinTCONS_00045010-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045010-exon-sc0006674-1575043694:671..967TCONS_00045010-exon-sc0006674-1575043694:671..967Clytia hemisphaericaexon
TCONS_00045010-exon-sc0006674-1575043694:105..306TCONS_00045010-exon-sc0006674-1575043694:105..306Clytia hemisphaericaexon
TCONS_00045010-exon-sc0006674-1510915933:671..967TCONS_00045010-exon-sc0006674-1510915933:671..967Clytia hemisphaericaexon
TCONS_00045010-exon-sc0006674-1510915933:105..306TCONS_00045010-exon-sc0006674-1510915933:105..306Clytia hemisphaericaexon
TCONS_00045010-exon-sc0006674-1491911889:671..967TCONS_00045010-exon-sc0006674-1491911889:671..967Clytia hemisphaericaexon
TCONS_00045010-exon-sc0006674-1491911889:105..306TCONS_00045010-exon-sc0006674-1491911889:105..306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006674supercontigsc0006674:105..967 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3032	0.464864	0.272461	0.217777	5.72057	2.04301	3.38927	1.03344	1.45903	2.7557	2.00358	0.312452	0.643749	0.633075	0.583976	0	0.682122	0.383599	0	0.341755	0	0.296224	0	0.156863	1.57572	2.5539	0.0142145	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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