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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045017 ID=TCONS_00045017|Name=TCONS_00045017|organism=Clytia hemisphaerica|type=transcript|length=1211bp
GTTTGGACttgattttataatttatcaatcacgttttcaaaatgttctta
tttttcgttGCGCTGTCGTTTCCTACCATCAAGAGGAAACGAACTCCCCG
GCAGTTATTATTCACCGAAGAGATAACCCATCGATCGTGGATCGCGGCCG
TCATCATTTTGGCTAGTGCTTCCTTGGGATGGGTTGCCACCTCGGAAATC
CTATAATAAGGAAGACAACATCGAACGGAATAAACTGAAGAACAACCCCG
TAAGTCCGTCCGAGCGTTGGGCTCAGATTAAAGCTGAGCAAGAAGAGCCT
GATTGGGATGACGAATTGAATTGTTCGGAATTGTCGGATTCAGCCGAAGT
GATTGAGTAGCTCGGTAAGTTTTCATTTGTTTGCAATACTTCCGGCCATT
GCTCATGTACGGGAGCTCCTCGTTGCAGTGGTTGAGGCGGTTTCTCATAT
CTCCACACCGTAAACGCTCCgaatttttctttcctcaaTCCCATTCGACG
AAGATAATCAGCTCTGTATTCTTCTGTTGTCAAACGTATTAAGATATCTA
GTCGGCGGTCTTCTTCCCTGATATTGCTTGCTTCTTTGGGTGATCTTCTT
TTAAGTCTTGTCAAGATTATCTCACTGTGCATCCTTCCAAAATACGAAAG
AATAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTCGATACAGG
GTGCTATCNNNNNTTCTTTTAAGTCTTGTCAAGATTATCTCACTGTGCAT
CCTTCCAAAATACGAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCC
TTTGCAGTTCGATACAGGGTGCTATCTTCAGCTGTATAAATTGAAAGCGA
ATTCTTGTGATTGTGTCTTGATTGATCGCTCACCATGAGGACGACTCGTA
TTTTCTTTAACAGCATGGCCTGTTGCTTCTGTGACATAATTTTATCCATC
TTGATTTCTAGATTCACTCGTCCTGTCGCCAGAAGTAATTGAAAGCTGAG
CGTGGACAATCGCAGCACCATCTTGTCAACCATCAGAATGTTGAACCGTG
AAATATaatgattttttgtttcttttatacACCTCACAAAAATTTCGTTT
GTTATTTCCTTTCCTCCACAGCTTCCTTTGTTTCGTCACAATACATATAG
TACAAACTTTTGCGGTACTTCGGTTACCATGATTGCAACTCTTTTAAAAT
TAATGAGTCTT Run BLAST on NCBI transcript from alignment at sc0006680:1..1566- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045017 ID=TCONS_00045017|Name=TCONS_00045017|organism=Clytia hemisphaerica|type=transcript|length=1566bp|location=Sequence derived from alignment at sc0006680:1..1566- (Clytia hemisphaerica)
GTTTGGACTTGATTTTATAATTTATCAATCACGTTTTCAAAATGTTCTTA
TTTTTCGTTGCGCTGTCGTTTCCTACCATCAAGAGGAAACGAACTCCCCG
GCAGTTATTATTCACCGAAGAGATAACCCATCGATCGTGGATCGCGGCCG
TCATCATTTTGGCTAGTGCTTCCTTGGGATGGGTTGCCACCTCGGAAATC
CTATAATAAGGAAGACAACATCGAACGTAAGTGGAAAAATTCTATATTAA
TTTACAATCAAATATTAANNNNNNNNNNNNNNNNNNATCATTTTGGCCAG
TGCTTCCTTGGGATGGGTTGCCACCTCGGAAATCCTATAATAAGGAAGAC
AACATCGAACGTAAGTGGAAAAATTCTATATTAATTTACAATCAAATATT
AAATATTAAAACGTCCTAAAGTTCTCTGATACCAGATCATTGAACCAAAT
AAATAAAATACTACAAAAAAAAATTTTAATCGACAAATTCTAATCAAATT
TTATATACAAATCTTCATTTTATGATTCACTAATAACATTCTTGTTACAG
TTCCTGATGGTTTTTCTTCATTACTTTTCAGGGAATAAACTGAAGAACAA
CCCCGTAAGTCCGTCCGAGCGTTGGGCTCAGATTAAAGCTGAGCAAGAAG
AGCCTGATTGGGATGACGAATTGAATTGTTCGGAATTGTCGGATTCAGCC
GAAGTGATTGAGTAGCTCGGTAAGTTTTCATTTGTTTGCAATACTTCCGG
CCATTGCTCATGTACGGGAGCTCCTCGTTGCAGTGGTTGAGGCGGTTTCT
CATATCTCCACACCGTAAACGCTCCGAATTTTTCTTTCCTCAATCCCATT
CGACGAAGATAATCAGCTCTGTATTCTTCTGTTGTCAAACGTATTAAGAT
ATCTAGTCGGCGGTCTTCTTCCCTGATATTGCTTGCTTCTTTGGGTGATC
TTCTTTTAAGTCTTGTCAAGATTATCTCACTGTGCATCCTTCCAAAATAC
GAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTCGAT
ACAGGGTGCTATCNNNNNTTCTTTTAAGTCTTGTCAAGATTATCTCACTG
TGCATCCTTCCAAAATACGAAAGAATAAGTTGGGGTTTTGTGTTTATTAT
ATCCCTTTGCAGTTCGATACAGGGTGCTATCTTCAGCTGTATAAATTGAA
AGCGAATTCTTGTGATTGTGTCTTGATTGATCGCTCACCATGAGGACGAC
TCGTATTTTCTTTAACAGCATGGCCTGTTGCTTCTGTGACATAATTTTAT
CCATCTTGATTTCTAGATTCACTCGTCCTGTCGCCAGAAGTAATTGAAAG
CTGAGCGTGGACAATCGCAGCACCATCTTGTCAACCATCAGAATGTTGAA
CCGTGAAATATAATGATTTTTTGTTTCTTTTATACACCTCACAAAAATTT
CGTTTGTTATTTCCTTTCCTCCACAGCTTCCTTTGTTTCGTCACAATACA
TATAGTACAAACTTTTGCGGTACTTCGGTTACCATGATTGCAACTCTTTT
AAAATTAATGAGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045017-exon-sc0006680-1575043694:1341..1566 | TCONS_00045017-exon-sc0006680-1575043694:1341..1566 | Clytia hemisphaerica | exon |
| TCONS_00045017-exon-sc0006680-1575043694:1..985 | TCONS_00045017-exon-sc0006680-1575043694:1..985 | Clytia hemisphaerica | exon |
| TCONS_00045017-exon-sc0006680-1510915933:1341..1566 | TCONS_00045017-exon-sc0006680-1510915933:1341..1566 | Clytia hemisphaerica | exon |
| TCONS_00045017-exon-sc0006680-1510915933:1..985 | TCONS_00045017-exon-sc0006680-1510915933:1..985 | Clytia hemisphaerica | exon |
| TCONS_00045017-exon-sc0006680-1491911889:1341..1566 | TCONS_00045017-exon-sc0006680-1491911889:1341..1566 | Clytia hemisphaerica | exon |
| TCONS_00045017-exon-sc0006680-1491911889:1..985 | TCONS_00045017-exon-sc0006680-1491911889:1..985 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006680 | supercontig | sc0006680:1..1566 - |
Blast
The following BLAST results are available for this feature:
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