TCONS_00045030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045030
Unique NameTCONS_00045030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045030 ID=TCONS_00045030|Name=TCONS_00045030|organism=Clytia hemisphaerica|type=transcript|length=425bp
TTAGTTCTCATTAGAATACACAAACCATCCGTCGTTGTGTCTATGGGTAC
CGTTGCTAAGCAACCTTTTAATGGACCCCACTTCTGTCAACTGTAACGAA
ACACTTGCTCAGTCCACGGCCATCCTGGAAGCTAAAGCTGCATTACATAA
AGATTTCGAACCGCTTGTCGTGACGCTGGAGAACAAGTTAGATCATTATT
TTAACGAACAAAATGGCAAACTTGGCAAGcTTTGTGAGCGCCGTAATACA
GAGCCAACGGAGCTTTCCGGCCTTTCAGGGCCAGTCACGGAGACGTGGAA
CGCCTTACGAAAGTTTGTAGGTGATGCAGGTGGTGCAGGGGCTATCAGTT
TAGCCTGTGTAACTGTGACTGCGTTGAATACACTCAATAAACGACAGTTG
GTCATGGAAAATGCTGCTGCAGGTT
Run BLAST on NCBI

protein sequence of TCONS_00045030-protein

>TCONS_00045030-protein ID=TCONS_00045030-protein|Name=TCONS_00045030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MDPTSVNCNETLAQSTAILEAKAALHKDFEPLVVTLENKLDHYFNEQNGK
LGKLCERRNTEPTELSGLSGPVTETWNALRKFVGDAGGAGAISLACVTVT
ALNTLNKRQLVMENAAAG
Run BLAST on NCBI

transcript from alignment at sc0006723:670..1431+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045030 ID=TCONS_00045030|Name=TCONS_00045030|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at sc0006723:670..1431+ (Clytia hemisphaerica)
TTAGTTCTCATTAGAATACACAAACCATCCGTCGTTGTGTCTATGGGTAC
CGTTGCTAAGCAACCTTTTAATGGACCCCACTTCTGTCAACTGTAACGAA
ACACTTGCTCAGTCCACGGCCATCCTGGAAGCTAAAGCTGCATTACATAA
AGATTTCGAACCGCTTGTCGTGACGCTGGAGAACAAGTTAGATCATTATT
TTAACGAACAAAATGGCAAACTTGGCAAGGTATGAGATTTGTTACTTCTT
CAAAATGTACTTACAGATCTCTAACAACTTACGTCTTTATTATGGagtct
ttctataattcgaactaaaatattggtcccttcAGCTAGAAAGTAGTATA
AAATACTCCctgtaattcgaagaaaaattcTTGGTCGCTTGAAGACGGAA
TTTAATAGAGTCAACTTTATGTGTATTTTTCTTGGAGATTGCTTGGTTGT
TCTCTAACCAATGCACAGAGAATTTCTTGACTTTTTAAGGTTATCGGTTT
GTTCAATGTTCAATGCTTTGTAGATTAACCAGTTCCAAAAAAGTatcact
tttttcatttttgcagcTTTGTGAGCGCCGTAATACAGAGCCAACGGAGC
TTTCCGGCCTTTCAGGGCCAGTCACGGAGACGTGGAACGCCTTACGAAAG
TTTGTAGGTGATGCAGGTGGTGCAGGGGCTATCAGTTTAGCCTGTGTAAC
TGTGACTGCGTTGAATACACTCAATAAACGACAGTTGGTCATGGAAAATG
CTGCTGCAGGTT

Coding sequence (CDS) from alignment at sc0006723:670..1431+

>TCONS_00045030 ID=TCONS_00045030|Name=TCONS_00045030|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0006723:670..1431+ (Clytia hemisphaerica)
ATGGACCCCACTTCTGTCAACTGTAACGAAACACTTGCTCAGTCCACGGC
CATCCTGGAAGCTAAAGCTGCATTACATAAAGATTTCGAACCGCTTGTCG
TGACGCTGGAGAACAAGTTAGATCATTATTTTAACGAACAAAATGGCAAA
CTTGGCAAGcTTTGTGAGCGCCGTAATACAGAGCCAACGGAGCTTTCCGG
CCTTTCAGGGCCAGTCACGGAGACGTGGAACGCCTTACGAAAGTTTGTAG
GTGATGCAGGTGGTGCAGGGGCTATCAGTTTAGCCTGTGTAACTGTGACT
GCGTTGAATACACTCAATAAACGACAGTTGGTCATGGAAAATGCTGCTGC
AGGTATGGACCCCACTTCTGTCAACTGTAACGAAACACTTGCTCAGTCCA
CGGCCATCCTGGAAGCTAAAGCTGCATTACATAAAGATTTCGAACCGCTT
GTCGTGACGCTGGAGAACAAGTTAGATCATTATTTTAACGAACAAAATGG
CAAACTTGGCAAGcTTTGTGAGCGCCGTAATACAGAGCCAACGGAGCTTT
CCGGCCTTTCAGGGCCAGTCACGGAGACGTGGAACGCCTTACGAAAGTTT
GTAGGTGATGCAGGTGGTGCAGGGGCTATCAGTTTAGCCTGTGTAACTGT
GACTGCGTTGAATACACTCAATAAACGACAGTTGGTCATGGAAAATGCTG
CTGCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028615XLOC_028615Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045030-proteinTCONS_00045030-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045030-exon-sc0006723-1491911889:670..898TCONS_00045030-exon-sc0006723-1491911889:670..898Clytia hemisphaericaexon
TCONS_00045030-exon-sc0006723-1510915933:670..898TCONS_00045030-exon-sc0006723-1510915933:670..898Clytia hemisphaericaexon
TCONS_00045030-exon-sc0006723-1575043694:670..898TCONS_00045030-exon-sc0006723-1575043694:670..898Clytia hemisphaericaexon
TCONS_00045030-exon-sc0006723-1491911889:1236..1431TCONS_00045030-exon-sc0006723-1491911889:1236..1431Clytia hemisphaericaexon
TCONS_00045030-exon-sc0006723-1510915933:1236..1431TCONS_00045030-exon-sc0006723-1510915933:1236..1431Clytia hemisphaericaexon
TCONS_00045030-exon-sc0006723-1575043694:1236..1431TCONS_00045030-exon-sc0006723-1575043694:1236..1431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006723supercontigsc0006723:670..1431 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.39192	1.09371	1.67374	2.65791	9.18045	6.18012	6.55084	8.67196	3.91544	4.98261	6.16014	5.15918	5.38788	6.73448	3.98149	4.22039	4.87545	6.91315	4.80086	5.56229	7.13401	5.50335	4.32921	5.4889	7.22529	5.27688	5.45189	3.48781	3.62372	5.0841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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