TCONS_00045045 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045045
Unique NameTCONS_00045045
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045045 ID=TCONS_00045045|Name=TCONS_00045045|organism=Clytia hemisphaerica|type=transcript|length=396bp
GAATGAACAAGATAGATACAAGAAGAAATGCCCAATATGTGGGAAAATCC
CCTCCAATTTGGTCCGACATCTAAAGTCAAAAACGATCCCACTACACAAT
TTAGATCATAAAAGTGCTTTGGATCTATCATTCAAGCAACGAAAGCCGTA
TAACAAAGTCACCACGTCAAACCCAAAGACAAAGAATTACCATTCGAGAA
GATATTGTCTTTTGGCAGGTTGTGGCAGGGAAATGTCAAACCCAAGCGAG
CATCTTTCAGGTTGCCATGACATCAAAGATCCAAAAGAGAGGAAATCTTT
GCTGGAATACATGAGAACACAAGGGAACACTGTTAAAGATACTGGTGCAA
AATCAAATTCAGTCTTTCATCAATCGCAACTGATATCAAATCAACC
Run BLAST on NCBI

transcript from alignment at sc0006769:510..1469+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045045 ID=TCONS_00045045|Name=TCONS_00045045|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at sc0006769:510..1469+ (Clytia hemisphaerica)
GAATGAACAAGATAGATACAAGAAGAAATGCCCAATATGTGGGAAAATCC
CCTCCAATTTGGTCCGACATCTAAAGTCAAAAACGATCCCACTACACAAT
TTAGATCATAAAAGTGCTTTGGATCTATCATTCAAGCAACGAAAGCCGTA
TAACAAAGTCACCACGTCAAACCCAAAGACAAAGAATTACCATTCGAGAA
GATATTGTCTTTTGGCAGGTTGTGGCAGGGAAATGTCAAACCCAAGCGAG
CATCTTTCAGGTTGCCATGACATCAAAGATCCAAAAGAGAGGAAATCTTT
GCTGGAATACATGAGAACACAAGGTGAGTTCAAAACTTGACATCATTCCT
TATTAGTATTCTTTAAATAACTCACCCTTTTCTAAGACATCTGAACATTT
AATTTAAAGAgcattttgtttaaaatagCATATGTATATTTATTTCTTAG
GGAACACTGTTAAAGATACTGGTGCAAAATCAAATTCAGGTATAGTttat
ttgtgtgttttttggtGTGTGGCCAAAAGGTTTCAGATTAGCCTAAGGAC
TTTAAAGTTGAGGAAATATTACTTTTCCCCGTCATTGATTTTCAACAAAC
AAATCTGCCACCTTTTAAGAATTGAAGTCACAAATTCACGTTACTCTGGG
AGAGGCCACTAAGAACGTAACAAATACTGAAacaaatctatcttaccagt
aTATTATGGAATTACCTTGTTTCGTTTGATCATTTAATTGTGCTGGTAAA
AAACTGTAGCAATTCTATCATATCAGTATAGTATGGAATTACGATGCATC
GTTGTTCTAATATAGATAATGTATCAATTCTATCCTACTCTATCCTAATT
CTATCCTACTAGTACAATATACGTTGTGTCGTTTGATCTTTGTGTTTATG
AGATATTGTACTTTCATTTACAGCAGTCTTTCATCAATCGCAACTGATAT
CAAATCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028630XLOC_028630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045045-exon-sc0006769-1491911889:510..832TCONS_00045045-exon-sc0006769-1491911889:510..832Clytia hemisphaericaexon
TCONS_00045045-exon-sc0006769-1510915933:510..832TCONS_00045045-exon-sc0006769-1510915933:510..832Clytia hemisphaericaexon
TCONS_00045045-exon-sc0006769-1575043694:510..832TCONS_00045045-exon-sc0006769-1575043694:510..832Clytia hemisphaericaexon
TCONS_00045045-exon-sc0006769-1491911889:960..998TCONS_00045045-exon-sc0006769-1491911889:960..998Clytia hemisphaericaexon
TCONS_00045045-exon-sc0006769-1510915933:960..998TCONS_00045045-exon-sc0006769-1510915933:960..998Clytia hemisphaericaexon
TCONS_00045045-exon-sc0006769-1575043694:960..998TCONS_00045045-exon-sc0006769-1575043694:960..998Clytia hemisphaericaexon
TCONS_00045045-exon-sc0006769-1491911889:1436..1469TCONS_00045045-exon-sc0006769-1491911889:1436..1469Clytia hemisphaericaexon
TCONS_00045045-exon-sc0006769-1510915933:1436..1469TCONS_00045045-exon-sc0006769-1510915933:1436..1469Clytia hemisphaericaexon
TCONS_00045045-exon-sc0006769-1575043694:1436..1469TCONS_00045045-exon-sc0006769-1575043694:1436..1469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006769supercontigsc0006769:510..1469 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.39901	0	1.43886	0	3.65203	1.68612	1.6403	1.96554	0	0	0	0	0	0	0	0	0	0	0	2.72689	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045045 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top