TCONS_00045049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045049
Unique NameTCONS_00045049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045049 ID=TCONS_00045049|Name=TCONS_00045049|organism=Clytia hemisphaerica|type=transcript|length=399bp
AGTGTACCTAATCTATCTTCGATAGAAggaaaacttttataaatagtGCA
TTATCGaaacattatcaaaatatatctcaaataataataataaataaatg
tCAACTGTCCTACtcgaaaaataatgaaaagtaGATAACGAAGATGGAAT
CATTTTAAAAGTTAAATCCTTAAAATAGTCAACGACGGACGGTCAACGGG
GGCATGCCGcttgagtttgaaaagtggaccctgtcagatataaTATAAAG
AGTGAAAAGAGgcaaaaatgactgaaagtagACGAAAAGTTAAACATTTT
TCTAATCTCCACTCTGAAAATTGTCCGAAATAACCAAAGTCGACCCTGCC
AGATACAAAAGTTAAGCCTTGAAGCGTATTACTGAAAGTGGTATGGTGT
Run BLAST on NCBI

transcript from alignment at sc0006775:770..1168

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045049 ID=TCONS_00045049|Name=TCONS_00045049|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at sc0006775:770..1168 (Clytia hemisphaerica)
ACACCATACCACTTTCAGTAATACGCTTCAAGGCTTAACTTTTGTATCTG
GCAGGGTCGACTTTGGTTATTTCGGACAATTTTCAGAGTGGAGATTAGAA
AAATGTTTAACTTTTCGTctactttcagtcatttttgcCTCTTTTCACTC
TTTATAttatatctgacagggtccacttttcaaactcaagCGGCATGCCC
CCGTTGACCGTCCGTCGTTGACTATTTTAAGGATTTAACTTTTAAAATGA
TTCCATCTTCGTTATCtacttttcattatttttcgaGTAGGACAGTTGac
atttatttattattattatttgagatatattttgataatgtttCGATAAT
GCactatttataaaagttttccTTCTATCGAAGATAGATTAGGTACACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028633XLOC_028633Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045049-exon-sc0006775-1491911889:770..1168TCONS_00045049-exon-sc0006775-1491911889:770..1168Clytia hemisphaericaexon
TCONS_00045049-exon-sc0006775-1510915933:770..1168TCONS_00045049-exon-sc0006775-1510915933:770..1168Clytia hemisphaericaexon
TCONS_00045049-exon-sc0006775-1575043694:770..1168TCONS_00045049-exon-sc0006775-1575043694:770..1168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006775supercontigsc0006775:770..1168 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.66812	2.54921	3.851	2.43993	4.6769	2.54295	2.05875	3.87804	0.36452	0.779611	1.48379	0.994862	1.73859	1.92426	1.12366	1.40128	3.224	3.74864	2.55968	5.01523	2.54356	2.95577	2.99733	3.07399	0.400957	0	8.19318	8.64656	1.86525	1.24165
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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