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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045050 ID=TCONS_00045050|Name=TCONS_00045050|organism=Clytia hemisphaerica|type=transcript|length=1399bp
GTAAAAATATAACTCGATGTTTGTTTGAAGTTGTTATGATTTCTAAAGCT
GAGTTACCAGTCTAGACCTGACTTTCCTAAGAAAAAAACCCTGTGCTACT
GCACAAAACATTCACCAGAAACTAGAAGAGACGCAATGCTACAACAGACC
CAGCGACCATGGAAGAGCTAAACACCCAACCCAAAGAAAAATACACATCT
CAAGAAGACTACCTTGTAGATGTGTTTACCCCCCtcaaaaagaccaaaga
aaACGAAGACCTCAGTGCCCCAAAGTCAGGTCCTGTCTGGTACTCGTATA
GCTATAGAAATATTTAGACAATTATCTGTAATAAAGACCACGATTAAAAC
GCCAAATTGCCCAGTTTTTATCACATGGGTAGTGTTTATCATAAAATGAC
TTTTTGTCCTTTCTGAAATCTTCCCATCGTGATTTAACAACTTTAATAAA
ATGATCTACCTGTGCATTGTCTGTGTAACTTCTGAATGCCTTTGGAGCTT
TATTATCAACGTAGTGAATGTAGCCATCAGCAAAGAAGTTATAGTTAGCA
TCATTAAAGTTTTTGTCTTTTCGAAGTGCTGTTAATCGAAACATCAAAGC
TGCCCATTCATGCTCATCAAGGAAGAAAGCCCACGCAATGTGACCATAAT
AGGATGTACCTTCTAAAGCGTCCTTTAACCTTGTGACGGTGGTAGGCGGT
GTTTGAAAAAAGTAATCCATCCTTgcttttatgaatttttgaaagttgTT
GTCGACTGAATTCTTTCTGGAGTTTCCAATTGTTGAATATAGGTTCCCTG
CCACTGAGGGACGTGGTGATTTTGATTCTCCAGATGTTGTTTTTTGTGTT
GATGTTTTGGTTCCGAACGGGGTTCGAACTGCGACCTCTGGATTAGAAGT
CTGGTGTGCTGCCGATTGCGCCACAGATACTTGGGTTGagttggtttttg
ttttggaCTTCTTTGGATTTTTATCTTGGTCGTGTCCCTCTACTGGGGTT
TTACGGGTTACTTGAGTTGGGTTAACCACAAAATCCATTGGAGCCTCTTC
CAGGTGTCGGTTTCCATGGTTTTTGTAGGTTTTCATTGGTCTCTTTAGAC
TGTTCTCCTGGCGATTGGTTTCCAACGAAGCCAATAGGCCATGCGAATAG
GTACCAACATTTAAGTCCGAGTCTAATGAATCAACGTCCATGTGTGAGCT
GGCTTCCTTGACAGCTCCTGAATACGAGGGCCTTCTATCTGGAGCATTTC
CTGAGACAATGTTATCAGCCAATAGGCCGAGAGTTTCATCTGTAGGATGT
CGAGATGCCTGCTTATGGTGCGTCGGATTCGTTGGTTGCTTGGGATATAc
ggttgttgtttttgttttttctgctccACTGCTCTGGGGCTGAGAGGGA Run BLAST on NCBI transcript from alignment at sc0006776:5..1464+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045050 ID=TCONS_00045050|Name=TCONS_00045050|organism=Clytia hemisphaerica|type=transcript|length=1460bp|location=Sequence derived from alignment at sc0006776:5..1464+ (Clytia hemisphaerica)
GTAAAAATATAACTCGATGTTTGTTTGAAGTTGTTATGATTTCTAAAGCT
GAGTTACCAGTCTAGACCTGACTTTCCTAAGAAAAAAACCCTGTGCTACT
GCACAAAACATTCACCAGAAACTAGAAGAGACGCAATGCTACAACAGACC
CAGCGACCATGGAAGAGCTAAACACCCAACCCAAAGAAAAATACACATCT
CAAGAAGACTACCTTGTAGATGTGTTTACCCCCCtcaaaaagaccaaaga
aaACGAAGACCTCAGTGCCCCAAAGTCAGGTCCTGTCTGGTACTCGTATA
GCTATAGAAATATTTAGACAATTATCTGTAATAAAGACCACGATTAAAAC
GCCAAATTGCCCAGTTTTTATCACATGGGTAGTGTTTATCATAAAATGAC
TTTTTGTCCTTTCTGAAATCTTCCCATCGTGATTTAACAACTTTAATAAA
ATGATCTACCTGTGCATTGTCTGTGTAACTTCTGAATGCCTTTGGAGCTT
TATTATCAACGTAGTGAATGTAGCCATCAGCAAAGAAGTTATAGTTAGCA
TCATTAAAGTTTTTGTCTTTTCGAAGTGCTGTTAATCGAAACATCAAAGC
TGCCCATTCATGCTCATCAAGGAAGAAAGCCCACGCAATGTGACCATAAT
AGGATGTACCTTCTAAAGCGTCCTTTAACCTTGTGACGGTGGTAGGCGGT
GTTTGAAAAAAGTAATCCATCCTTgcttttatgaatttttgaaagttgTT
GTCGACTGAATTCTTTCTGGAGTTTCCAATTGTTGAATATAGGTTCCCTG
CCACTGAGGGACGTGGTGATTTTGATTCTCCAGATGTTGTTTTTTGTGTT
GATGTTTTGGTTCCGAACGGGGTTCGAACTGCGACCTCTGGATTAGAAGT
CTGGTGTGCTGCCGATTGCGCCACAGATACTTGGGTTGagttggtttttg
ttttggaCTTCTNGGTGTGCTGCCGATTGCGCCACAGATACTTGGGTTGa
gttggtttttgttttggaCTTCTTTGGATTTTTATCTTGGTCGTGTCCCT
CTACTGGGGTTTTACGGGTTACTTGAGTTGGGTTAACCACAAAATCCATT
GGAGCCTCTTCCAGGTGTCGGTTTCCATGGTTTTTGTAGGTTTTCATTGG
TCTCTTTAGACTGTTCTCCTGGCGATTGGTTTCCAACGAAGCCAATAGGC
CATGCGAATAGGTACCAACATTTAAGTCCGAGTCTAATGAATCAACGTCC
ATGTGTGAGCTGGCTTCCTTGACAGCTCCTGAATACGAGGGCCTTCTATC
TGGAGCATTTCCTGAGACAATGTTATCAGCCAATAGGCCGAGAGTTTCAT
CTGTAGGATGTCGAGATGCCTGCTTATGGTGCGTCGGATTCGTTGGTTGC
TTGGGATATAcggttgttgtttttgttttttctgctccACTGCTCTGGGG
CTGAGAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045050-exon-sc0006776-1491911889:5..907 | TCONS_00045050-exon-sc0006776-1491911889:5..907 | Clytia hemisphaerica | exon |
| TCONS_00045050-exon-sc0006776-1510915933:5..907 | TCONS_00045050-exon-sc0006776-1510915933:5..907 | Clytia hemisphaerica | exon |
| TCONS_00045050-exon-sc0006776-1575043694:5..907 | TCONS_00045050-exon-sc0006776-1575043694:5..907 | Clytia hemisphaerica | exon |
| TCONS_00045050-exon-sc0006776-1491911889:969..1464 | TCONS_00045050-exon-sc0006776-1491911889:969..1464 | Clytia hemisphaerica | exon |
| TCONS_00045050-exon-sc0006776-1510915933:969..1464 | TCONS_00045050-exon-sc0006776-1510915933:969..1464 | Clytia hemisphaerica | exon |
| TCONS_00045050-exon-sc0006776-1575043694:969..1464 | TCONS_00045050-exon-sc0006776-1575043694:969..1464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006776 | supercontig | sc0006776:5..1464 + |
Blast
The following BLAST results are available for this feature:
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