TCONS_00045058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045058
Unique NameTCONS_00045058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045058 ID=TCONS_00045058|Name=TCONS_00045058|organism=Clytia hemisphaerica|type=transcript|length=469bp
AAACAAGTTCTTGAAAAACTTAACAAAGGATGGCATATATTACGATACCA
GAAATAAGAGGTTTATCCTGAGCGCGGATGCATCAAGGCTTGCCGAACTC
ACAAAGAATGTCACTTTAAAAGACTCGACCGAGGAGCTAGCAACTTTAAA
AGCTAATATCACCAAGCGTGAAGTCATACTAGACTCTGATCCAGATATTG
TTACAAAAATGGGTGGAAAAGAGGCTAAGATGGAACAAGATGCAATTAAA
AAAGCAGAAGAAGTTTATCGATTTGCGAGACAGATTCTCGATATTGTTGG
CGATGAACCGAAAAAGAAATCGAAACGTGAAACTGGCGAAGAGCCTGAAC
ACAAAAAAAGTAACGGAATCATGGGTATGTGGGCCGCACTTGGTTCAAGT
CCCGAATTTGTTCCTGAGCTTGTTAAAAGAGACACATCTACTCCTTCCCA
TCACGCTGCACGGAAAATG
Run BLAST on NCBI

protein sequence of TCONS_00045058-protein

>TCONS_00045058-protein ID=TCONS_00045058-protein|Name=TCONS_00045058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
NKFLKNLTKDGIYYDTRNKRFILSADASRLAELTKNVTLKDSTEELATLK
ANITKREVILDSDPDIVTKMGGKEAKMEQDAIKKAEEVYRFARQILDIVG
DEPKKKSKRETGEEPEHKKSNGIMGMWAALGSSPEFVPELVKRDTSTPSH
HAARKM
Run BLAST on NCBI

transcript from alignment at sc0006798:6..474

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045058 ID=TCONS_00045058|Name=TCONS_00045058|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0006798:6..474 (Clytia hemisphaerica)
CATTTTCCGTGCAGCGTGATGGGAAGGAGTAGATGTGTCTCTTTTAACAA
GCTCAGGAACAAATTCGGGACTTGAACCAAGTGCGGCCCACATACCCATG
ATTCCGTTACTTTTTTTGTGTTCAGGCTCTTCGCCAGTTTCACGTTTCGA
TTTCTTTTTCGGTTCATCGCCAACAATATCGAGAATCTGTCTCGCAAATC
GATAAACTTCTTCTGCTTTTTTAATTGCATCTTGTTCCATCTTAGCCTCT
TTTCCACCCATTTTTGTAACAATATCTGGATCAGAGTCTAGTATGACTTC
ACGCTTGGTGATATTAGCTTTTAAAGTTGCTAGCTCCTCGGTCGAGTCTT
TTAAAGTGACATTCTTTGTGAGTTCGGCAAGCCTTGATGCATCCGCGCTC
AGGATAAACCTCTTATTTCTGGTATCGTAATATATGCCATCCTTTGTTAA
GTTTTTCAAGAACTTGTTT

Coding sequence (CDS) from alignment at sc0006798:6..474

>TCONS_00045058 ID=TCONS_00045058|Name=TCONS_00045058|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0006798:6..474 (Clytia hemisphaerica)
CATTTTCCGTGCAGCGTGATGGGAAGGAGTAGATGTGTCTCTTTTAACAA
GCTCAGGAACAAATTCGGGACTTGAACCAAGTGCGGCCCACATACCCATG
ATTCCGTTACTTTTTTTGTGTTCAGGCTCTTCGCCAGTTTCACGTTTCGA
TTTCTTTTTCGGTTCATCGCCAACAATATCGAGAATCTGTCTCGCAAATC
GATAAACTTCTTCTGCTTTTTTAATTGCATCTTGTTCCATCTTAGCCTCT
TTTCCACCCATTTTTGTAACAATATCTGGATCAGAGTCTAGTATGACTTC
ACGCTTGGTGATATTAGCTTTTAAAGTTGCTAGCTCCTCGGTCGAGTCTT
TTAAAGTGACATTCTTTGTGAGTTCGGCAAGCCTTGATGCATCCGCGCTC
AGGATAAACCTCTTATTTCTGGTATCGTAATATATGCCATCCTTTGTTAA
GTTTTTCAAGAACTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028642XLOC_028642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045058-exon-sc0006798-1491911889:6..474TCONS_00045058-exon-sc0006798-1491911889:6..474Clytia hemisphaericaexon
TCONS_00045058-exon-sc0006798-1510915933:6..474TCONS_00045058-exon-sc0006798-1510915933:6..474Clytia hemisphaericaexon
TCONS_00045058-exon-sc0006798-1575043694:6..474TCONS_00045058-exon-sc0006798-1575043694:6..474Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045058-proteinTCONS_00045058-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006798supercontigsc0006798:6..474 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.133063	0	0	0	0	0.434901	0.197587	0	0.142429	0.678336	0.616526	0.887328	0.827227	0.35769	1.13357	1.93561	0.436875	0	0	0.263861	0.386106	0.187918	0.628557	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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