TCONS_00045061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045061
Unique NameTCONS_00045061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045061 ID=TCONS_00045061|Name=TCONS_00045061|organism=Clytia hemisphaerica|type=transcript|length=323bp
CCAAttatattttcagcaatttttgaagaatattttggctattttaacat
CCATCAAAGCACAAGAAGAAGGCAAATCTAATCCTGAACAACAACCACAA
CCGGCTGTCCCTGTAAAGgaaACAAGAAAAATCGGAACAGAAAATAGATA
TGATCGTTTCTACCAAGAAAGATTCGACAGTCAAAAAGCAACTGAGGGAT
TCAAGATTGATACAATGGCTACCTTTCACGGTCTTGACTTACAGAGTGTA
AAAGAAGGAAAGAGTCAACGCCGTAACGCCCCAGCGCCATCCCCACACAA
CCCTATAAAATCGAGTTCCGGTG
Run BLAST on NCBI

protein sequence of TCONS_00045061-protein

>TCONS_00045061-protein ID=TCONS_00045061-protein|Name=TCONS_00045061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
QLYFQQFLKNILAILTSIKAQEEGKSNPEQQPQPAVPVKETRKIGTENRY
DRFYQERFDSQKATEGFKIDTMATFHGLDLQSVKEGKSQRRNAPAPSPHN
PIKSSSG
Run BLAST on NCBI

transcript from alignment at sc0006807:263..1434-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045061 ID=TCONS_00045061|Name=TCONS_00045061|organism=Clytia hemisphaerica|type=transcript|length=1172bp|location=Sequence derived from alignment at sc0006807:263..1434- (Clytia hemisphaerica)
CCAATTATATTTTCAGCAATTTTTGAAGAATATTTTGGCTATTTTAACAT
CCATCAAAGCACAAGAAGAAGGCAAATCTAATCCTGAACAACAACCACAA
CCGGCTGTCCCTGTAAAGGTACAGAAATAAATTAATTTTTACGTGAACGA
TGTCTCGAAATTGGGTTTTCCAGGAAAATGAGAGTTTTAGGAAGGTTTGT
GCTCAACAAACTGTTAAAACTTCTTATTTATAGAGCGAAATATAATGTAT
CATATTGGAAGTAATTTTTGTGGGAAGTAATATTCGCGGTCGAAAAAAAA
AATCGGAAAAATTGCTTTTCGCGGGTTTTAATTCTTGCGGTCTTGCCCTT
TTTTGGACAAATTTCTTTCATTTTCCGCTAAAATTAGAAAAAATTGTACT
TCGCGTGTTCAAATTTTCGTTGAAAAAAGGCAAAAATTAATTCCCGCGGA
AATTAGTTCCAATAAGGTATCTATAAGGGGTATTTCGGTTTTTCTTAAGC
CTAAAACGCAACATCAGAATATGTTCAAATCAATGTTGTGGAAAAAAGTA
TGAAAACAAGTCCTGCAGTTAGAATATGTACTACTTCTAATAGTAATTTA
GCTGACTCATTCATCTTTGTTTTCATTTTTTTAGGAAACAAGAAAAATCG
GAACAGAAAATAGATATGATCGTTTCTACCAAGAAAGATTCGACAGTCAA
AAAGGTACTAGGTGGTTAGGTTTCTTTCATTTCCTTTTGTGTGTCGAATT
CTTCCAGAGTTAAATTTATTATTTATTAGTTCAATTGATACCTCTTTGCA
TCTTGTTTACTTTATCACCTTAGCAACTGAGGGATTCAAGATTGATACAA
TGGCTACCTTTCACGGTCTTGACTTACAGAGTGTAAAAGTAAGCAAAAAC
CATTTTTGGATTATTTGACTTGTCTTTTTTAGCATAATTTGAAGGAAATT
TATCATATTTTTATTTTAACTTTTCTCAAATTTTCTGTCGGATATTTTTC
TGAAGGAAAAGAACGTCGTGCAAATTGATTAAAGTCAACAAATTTTCTCA
TGTTAAATTTTCTTTCGGATATTGTTATGTACAATCTACTTTAAATTTTA
AGGAAGGAAAGAGTCAACGCCGTAACGCCCCAGCGCCATCCCCACACAAC
CCTATAAAATCGAGTTCCGGTG

Coding sequence (CDS) from alignment at sc0006807:263..1434-

>TCONS_00045061 ID=TCONS_00045061|Name=TCONS_00045061|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0006807:263..1434- (Clytia hemisphaerica)
GAAGGAAAGAGTCAACGCCGTAACGCCCCAGCGCCATCCCCACACAACCC
TATAAAATCGAGTTCCGGTCAACTGAGGGATTCAAGATTGATACAATGGC
TACCTTTCACGGTCTTGACTTACAGAGTGTAAAAGAAACAAGAAAAATCG
GAACAGAAAATAGATATGATCGTTTCTACCAAGAAAGATTCGACAGTCAA
AAAGCAATTATATTTTCAGCAATTTTTGAAGAATATTTTGGCTATTTTAA
CATCCATCAAAGCACAAGAAGAAGGCAAATCTAATCCTGAACAACAACCA
CAACCGGCTGTCCCTGTAAAGGAAGGAAAGAGTCAACGCCGTAACGCCCC
AGCGCCATCCCCACACAACCCTATAAAATCGAGTTCCGGTCAACTGAGGG
ATTCAAGATTGATACAATGGCTACCTTTCACGGTCTTGACTTACAGAGTG
TAAAAGAAACAAGAAAAATCGGAACAGAAAATAGATATGATCGTTTCTAC
CAAGAAAGATTCGACAGTCAAAAAGCAATTATATTTTCAGCAATTTTTGA
AGAATATTTTGGCTATTTTAACATCCATCAAAGCACAAGAAGAAGGCAAA
TCTAATCCTGAACAACAACCACAACCGGCTGTCCCTGTAAAGGAAGGAAA
GAGTCAACGCCGTAACGCCCCAGCGCCATCCCCACACAACCCTATAAAAT
CGAGTTCCGGTCAACTGAGGGATTCAAGATTGATACAATGGCTACCTTTC
ACGGTCTTGACTTACAGAGTGTAAAAGAAACAAGAAAAATCGGAACAGAA
AATAGATATGATCGTTTCTACCAAGAAAGATTCGACAGTCAAAAAGCAAT
TATATTTTCAGCAATTTTTGAAGAATATTTTGGCTATTTTAACATCCATC
AAAGCACAAGAAGAAGGCAAATCTAATCCTGAACAACAACCACAACCGGC
TGTCCCTGTAAAGGAAGGAAAGAGTCAACGCCGTAACGCCCCAGCGCCAT
CCCCACACAACCCTATAAAATCGAGTTCCGGTCAACTGAGGGATTCAAGA
TTGATACAATGGCTACCTTTCACGGTCTTGACTTACAGAGTGTAAAAGAA
ACAAGAAAAATCGGAACAGAAAATAGATATGATCGTTTCTACCAAGAAAG
ATTCGACAGTCAAAAAGCAATTATATTTTCAGCAATTTTTGAAGAATATT
TTGGCTATTTTAACATCCATCAAAGCACAAGAAGAAGGCAAATCTAATCC
TGAACAACAACCACAACCGGCTGTCCCTGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028645XLOC_028645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045061-exon-sc0006807-1575043694:1317..1434TCONS_00045061-exon-sc0006807-1575043694:1317..1434Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1575043694:731..800TCONS_00045061-exon-sc0006807-1575043694:731..800Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1575043694:547..611TCONS_00045061-exon-sc0006807-1575043694:547..611Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1575043694:263..332TCONS_00045061-exon-sc0006807-1575043694:263..332Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1510915933:1317..1434TCONS_00045061-exon-sc0006807-1510915933:1317..1434Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1510915933:731..800TCONS_00045061-exon-sc0006807-1510915933:731..800Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1510915933:547..611TCONS_00045061-exon-sc0006807-1510915933:547..611Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1510915933:263..332TCONS_00045061-exon-sc0006807-1510915933:263..332Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1491911889:1317..1434TCONS_00045061-exon-sc0006807-1491911889:1317..1434Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1491911889:731..800TCONS_00045061-exon-sc0006807-1491911889:731..800Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1491911889:547..611TCONS_00045061-exon-sc0006807-1491911889:547..611Clytia hemisphaericaexon
TCONS_00045061-exon-sc0006807-1491911889:263..332TCONS_00045061-exon-sc0006807-1491911889:263..332Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045061-proteinTCONS_00045061-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006807supercontigsc0006807:263..1434 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.3484	53.4076	25.0159	31.713	70.0811	58.6952	47.2088	43.0727	31.7296	40.9262	31.527	42.2782	25.4558	37.1825	26.6817	30.3402	41.3479	32.8028	16.8705	24.5768	24.9721	29.0572	43.5291	46.7106	48.445	38.4651	20.4813	14.1167	31.085	32.0226
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032041Cdc73_N
Blast
[Close]
BLAST of TCONS_00045061 vs. Swiss-Prot (Human)
Match: CDC73 (Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.403e-21
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:   14 QQFLKNILAILTSIKAQEEGKSNPEQQPQP-AVPVKETRKIG--TENRYDRFYQERFDSQKATEGFKIDTMATFHGLDLQSVKEGKSQRRN-APAPSP 295
            + F KNI AIL S+KA+EEG++ PEQ+P P A PV  T +        Y+R+ QERF  ++ TEGFKIDTM T+HG+ L+SV EG S R+   PA  P
Sbjct:  243 KNFSKNIFAILQSVKAREEGRA-PEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQP 339
The following BLAST results are available for this feature:
BLAST of TCONS_00045061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC737.403e-2151.02Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1[more]
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