TCONS_00045069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045069
Unique NameTCONS_00045069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045069 ID=TCONS_00045069|Name=TCONS_00045069|organism=Clytia hemisphaerica|type=transcript|length=422bp
cagTTGATTTGAAGAGTGAAAACAGAACAGAAGATAATCATTTGGCTgtt
tttataaatcaaaaacaaagaagagAATTTTAACAGAATTTCAGCATGAA
GTTACACCTTTTATCATTGGTTTTGGTATTTGGTTGTTTATTACAAGTTG
AATCACAAAGTGTGAGCGACTATGCAGCCCTTGACACGTTCATACGAGAT
GCACTTTCTGGCCTCGCAAAGTCAGaaaGCAAATTTAAAGAAATATCTGC
CGTTGTCCAAGGTGCTATTGATTTCGTCAGTTCAATTAGTCCACGACGAA
AAACCGATCAACAACGAGGAGAGGAAATTATTCAACTCTTGAAAGATGTC
AGTGTAGATCGTGGAAATAAACAGGTTCTCAAAAATTTGCTTGGTCGAAT
TTTTGGATCAGTTTGGAAAACG
Run BLAST on NCBI

protein sequence of TCONS_00045069-protein

>TCONS_00045069-protein ID=TCONS_00045069-protein|Name=TCONS_00045069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MKLHLLSLVLVFGCLLQVESQSVSDYAALDTFIRDALSGLAKSESKFKEI
SAVVQGAIDFVSSISPRRKTDQQRGEEIIQLLKDVSVDRGNKQVLKNLLG
RIFGSVWKT
Run BLAST on NCBI

transcript from alignment at sc0006826:22..970-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045069 ID=TCONS_00045069|Name=TCONS_00045069|organism=Clytia hemisphaerica|type=transcript|length=949bp|location=Sequence derived from alignment at sc0006826:22..970- (Clytia hemisphaerica)
CAGTTGATTTGAAGAGTGAAAACAGAACAGAAGATAATCATTTGGCTGTT
TTTATAAATCAAAAACAAAGAAGAGAATTTTAACAGAATTTCAGGTAATT
AATTTAAAAAGTTTTATTTTCAATAAAAGGTGTCTACTGAAAATCTTGTA
TCGAATCATGCAATTAACACAAAACAAAAGCAATAATATTNNNNNNCAGG
CTAGGGGAGGGGGTGCGAAAGTATTTTGGGATTTTTCAAAATATCCTCCA
CTCCCCCCTAGTAGATACTTTCTGACCACTCCCTTAATCATATTTTCTAA
CCTTTTTAGCATGAAGTTACACCTTTTATCATTGGTTTTGGTATTTGGTT
GTTTATTACAAGTTGAATCACAAAGTAAGAATTTACAAAAAATTCATTAT
CTAGTCCAAGTAATGTTTATATATCTACTCAACAGGAATTTAGTTTTACA
TAAAAAAAATCAATACAAGAATTCATACATTTGCATTTTGTTCTCTTCTA
GGTGTGAGCGACTATGCAGCCCTTGACACGTTCATACGAGATGCACTTTC
TGGCCTCGCAAAGTCAGGTGACTCTTTCATTCATCTGTTTTAAAGGTTTT
TTTATACTCTTTTGAATAAGTTTTCATATATAAAACAAATTCATATTGAA
TTTAATTATTAATCTTTGAAATTAAGAAAACCTTTATCAACAGTTGATTA
ATGGAAGCTTGGATTTCACATCAATATAACATTTGTCAAATAAATATTTC
AGAAAGCAAATTTAAAGAAATATCTGCCGTTGTCCAAGGTGCTATTGATT
TCGTCAGTTCAATTAGTCCACGACGAAAAACCGATCAACAACGAGGAGAG
GAAATTATTCAACTCTTGAAAGATGTCAGTGTAGATCGTGGAAATAAACA
GGTTCTCAAAAATTTGCTTGGTCGAATTTTTGGATCAGTTTGGAAAACG

Coding sequence (CDS) from alignment at sc0006826:22..970-

>TCONS_00045069 ID=TCONS_00045069|Name=TCONS_00045069|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0006826:22..970- (Clytia hemisphaerica)
AAAGCAAATTTAAAGAAATATCTGCCGTTGTCCAAGGTGCTATTGATTTC
GTCAGTTCAATTAGTCCACGACGAAAAACCGATCAACAACGAGGAGAGGA
AATTATTCAACTCTTGAAAGATGTCAGTGTAGATCGTGGAAATAAACAGG
TTCTCAAAAATTTGCTTGGTCGAATTTTTGGATCAGTTTGGAAAACGGTG
TGAGCGACTATGCAGCCCTTGACACGTTCATACGAGATGCACTTTCTGGC
CTCGCAAAGTCAGATGAAGTTACACCTTTTATCATTGGTTTTGGTATTTG
GTTGTTTATTACAAGTTGAATCACAAAAAAGCAAATTTAAAGAAATATCT
GCCGTTGTCCAAGGTGCTATTGATTTCGTCAGTTCAATTAGTCCACGACG
AAAAACCGATCAACAACGAGGAGAGGAAATTATTCAACTCTTGAAAGATG
TCAGTGTAGATCGTGGAAATAAACAGGTTCTCAAAAATTTGCTTGGTCGA
ATTTTTGGATCAGTTTGGAAAACGGTGTGAGCGACTATGCAGCCCTTGAC
ACGTTCATACGAGATGCACTTTCTGGCCTCGCAAAGTCAGATGAAGTTAC
ACCTTTTATCATTGGTTTTGGTATTTGGTTGTTTATTACAAGTTGAATCA
CAAAAAAGCAAATTTAAAGAAATATCTGCCGTTGTCCAAGGTGCTATTGA
TTTCGTCAGTTCAATTAGTCCACGACGAAAAACCGATCAACAACGAGGAG
AGGAAATTATTCAACTCTTGAAAGATGTCAGTGTAGATCGTGGAAATAAA
CAGGTTCTCAAAAATTTGCTTGGTCGAATTTTTGGATCAGTTTGGAAAAC
GGTGTGAGCGACTATGCAGCCCTTGACACGTTCATACGAGATGCACTTTC
TGGCCTCGCAAAGTCAGATGAAGTTACACCTTTTATCATTGGTTTTGGTA
TTTGGTTGTTTATTACAAGTTGAATCACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028653XLOC_028653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045069-exon-sc0006826-1575043694:877..970TCONS_00045069-exon-sc0006826-1575043694:877..970Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1575043694:597..661TCONS_00045069-exon-sc0006826-1575043694:597..661Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1575043694:404..469TCONS_00045069-exon-sc0006826-1575043694:404..469Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1575043694:22..218TCONS_00045069-exon-sc0006826-1575043694:22..218Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1510915933:877..970TCONS_00045069-exon-sc0006826-1510915933:877..970Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1510915933:597..661TCONS_00045069-exon-sc0006826-1510915933:597..661Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1510915933:404..469TCONS_00045069-exon-sc0006826-1510915933:404..469Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1510915933:22..218TCONS_00045069-exon-sc0006826-1510915933:22..218Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1491911889:877..970TCONS_00045069-exon-sc0006826-1491911889:877..970Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1491911889:597..661TCONS_00045069-exon-sc0006826-1491911889:597..661Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1491911889:404..469TCONS_00045069-exon-sc0006826-1491911889:404..469Clytia hemisphaericaexon
TCONS_00045069-exon-sc0006826-1491911889:22..218TCONS_00045069-exon-sc0006826-1491911889:22..218Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045069-proteinTCONS_00045069-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006826supercontigsc0006826:22..970 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.428284	0	0	0	0	0	1.21853	0.460165	0.945795	2.74045	4.25128	18.1986	4.42648	12.7843	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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