TCONS_00045101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045101
Unique NameTCONS_00045101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045101 ID=TCONS_00045101|Name=TCONS_00045101|organism=Clytia hemisphaerica|type=transcript|length=401bp
CGACTGCCTAAATTTTTCAGAATCAGTGTTTGTAACTTTTACTTGGGAGG
CCGAGAATATCTTCCACCAATGGGAGTGaagaaaacaattatttttaaaa
gcaTGGTTTTGAACTAAACGAAAAGGATGGACACTGCACTAAGGACAGGA
ATAATTTCAATAACAATAGAGTTTATACCTCTTTCTCTGGAAAACACAGC
CTGTTGATCAAGAACGTATAGCAATATAATGTTTATGTAATTCAGaggta
atcttttttttttttagtctgGCATCATCTGGCTTTGGGGAaacctttga
aagaaaaagaagagggaccattttcattttgattgacTTTTGATTCAGAA
AATACAAAGTCTTTGTTGCTGGAGCTTTTGATCATTTGACATGACTTTAG
G
Run BLAST on NCBI

transcript from alignment at sc0006915:33..433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045101 ID=TCONS_00045101|Name=TCONS_00045101|organism=Clytia hemisphaerica|type=transcript|length=401bp|location=Sequence derived from alignment at sc0006915:33..433 (Clytia hemisphaerica)
CCTAAAGTCATGTCAAATGATCAAAAGCTCCAGCAACAAAGACTTTGTAT
TTTCTGAATCAAAAgtcaatcaaaatgaaaatggtccctcttctttttct
ttcaaaggttTCCCCAAAGCCAGATGATGCcagactaaaaaaaaaaaaga
ttacctCTGAATTACATAAACATTATATTGCTATACGTTCTTGATCAACA
GGCTGTGTTTTCCAGAGAAAGAGGTATAAACTCTATTGTTATTGAAATTA
TTCCTGTCCTTAGTGCAGTGTCCATCCTTTTCGTTTAGTTCAAAACCAtg
cttttaaaaataattgttttcttCACTCCCATTGGTGGAAGATATTCTCG
GCCTCCCAAGTAAAAGTTACAAACACTGATTCTGAAAAATTTAGGCAGTC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028684XLOC_028684Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045101-exon-sc0006915-1491911889:33..433TCONS_00045101-exon-sc0006915-1491911889:33..433Clytia hemisphaericaexon
TCONS_00045101-exon-sc0006915-1510915933:33..433TCONS_00045101-exon-sc0006915-1510915933:33..433Clytia hemisphaericaexon
TCONS_00045101-exon-sc0006915-1575043694:33..433TCONS_00045101-exon-sc0006915-1575043694:33..433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006915supercontigsc0006915:33..433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.55434	0.18019	0.418435	0.409373	4.48535	1.9691	0.475127	0.444809	0.778552	1.35011	1.31045	0.123062	0.737348	0.382872	0.419697	0.900797	0.554854	0.284354	1.17855	0.822179	1.25059	1.30713	0.42373	0.385232	0.19839	1.59353	0.76011	0	0	0.835822
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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