TCONS_00045103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045103
Unique NameTCONS_00045103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045103 ID=TCONS_00045103|Name=TCONS_00045103|organism=Clytia hemisphaerica|type=transcript|length=608bp
GTAGCTCTCATTTGACCTGACACATTTCAGaatatcttataaaaaagatc
aCTGTCGAAATGAATATTGCACTTTCTTgtgttttcaaattcaaatttcc
ttttaaaTCAATGAAGAAAAGTCTGATATGATACAATTATGAAATTacaa
tgttttgaatttgacCCAAACCTCCCAAAAGAGGAGATTATCGAAACTTC
ATTTAATGAGGATCAAGCATCcaacttttaaaagtcaaacaATCCAAAAT
CTAAGTCACGTCAATCCATAATCATCAAGCCGACATTGTCAATTCTGCAT
GATGTCTTCTATGTCTTCCAGTGGTTTCATACTGTTTGTGGTCCATATTG
ATCGATATTGAGGATTTAGCATACCGTCTTCAGGAAACGACTCGTCTACC
TAGTTTACAAAGTCAAGTAtaattgactctctctaattcaaactcGAACG
gcgaatcttatttgttcgaattacagagagattcgaataatagaaaatat
tttaagaggGATTTTCTTTGGTTGGACTGACAAcaatttcgaattataga
aagaatcGAATAACAAAAGTTCGAATAAGTGAGAGTttatcggggggggg
gggtcatg
Run BLAST on NCBI

transcript from alignment at sc0006916:2..609

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045103 ID=TCONS_00045103|Name=TCONS_00045103|organism=Clytia hemisphaerica|type=transcript|length=608bp|location=Sequence derived from alignment at sc0006916:2..609 (Clytia hemisphaerica)
catgaccccccccccccgataaACTCTCACTTATTCGAACTTTTGTTATT
CgattctttctataattcgaaattgTTGTCAGTCCAACCAAAGAAAATCc
ctcttaaaatattttctattattcgaatctctctgtaattcgaacaaata
agattcgcCGTTCgagtttgaattagagagagtcaattaTACTTGACTTT
GTAAACTAGGTAGACGAGTCGTTTCCTGAAGACGGTATGCTAAATCCTCA
ATATCGATCAATATGGACCACAAACAGTATGAAACCACTGGAAGACATAG
AAGACATCATGCAGAATTGACAATGTCGGCTTGATGATTATGGATTGACG
TGACTTAGATTTTGGATtgtttgacttttaaaagttgGATGCTTGATCCT
CATTAAATGAAGTTTCGATAATCTCCTCTTTTGGGAGGTTTGGgtcaaat
tcaaaacattgtAATTTCATAATTGTATCATATCAGACTTTTCTTCATTG
AtttaaaaggaaatttgaatttgaaaacacAAGAAAGTGCAATATTCATT
TCGACAGtgatcttttttataagatattCTGAAATGTGTCAGGTCAAATG
AGAGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028686XLOC_028686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045103-exon-sc0006916-1491911889:2..609TCONS_00045103-exon-sc0006916-1491911889:2..609Clytia hemisphaericaexon
TCONS_00045103-exon-sc0006916-1510915933:2..609TCONS_00045103-exon-sc0006916-1510915933:2..609Clytia hemisphaericaexon
TCONS_00045103-exon-sc0006916-1575043694:2..609TCONS_00045103-exon-sc0006916-1575043694:2..609Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006916supercontigsc0006916:2..609 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0867077	0.100676	0.0984957	0.839364	0.473769	0.457266	0.214043	0.150188	1.11373	0.180169	0.177654	0.0592744	0.184239	0	0.0597014	0.0667494	0.136832	0	0.0989088	0.429848	0.377397	0.30585	0.0926874	99.4754	97.8108	0.121922	0	0.0986905	0.10055
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top