TCONS_00045104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045104
Unique NameTCONS_00045104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045104 ID=TCONS_00045104|Name=TCONS_00045104|organism=Clytia hemisphaerica|type=transcript|length=351bp
tttagataccaaaatgaaacaataaactaTAAAAAAGCGTTGTAAAGAGA
TGACCAATCAGGGACTTACTGGAATGACAATATAATGGTCAAAATGGCGG
ACACACGGAGGTTCACACAAAAAAGACGTTTCATTTTAGTCTACCCCTGA
TTTGTGTTCAGCTTTACTAAGAATTATCAACGAAGAAGTTAGCTTTTCAA
ATCATACACAAGAGACAACCAATAAAAATATTCGATAAATCTATGCAGCA
AATCATTTTATAcaactaaaaacaaaaattggtaGGGTACTTGTACAGCC
TTTTTGGAAATTCCCGACAAGCTCGCAATGTATGTGCAGGCGAAATCGTC
G
Run BLAST on NCBI

transcript from alignment at sc0006921:256..606

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045104 ID=TCONS_00045104|Name=TCONS_00045104|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at sc0006921:256..606 (Clytia hemisphaerica)
CGACGATTTCGCCTGCACATACATTGCGAGCTTGTCGGGAATTTCCAAAA
AGGCTGTACAAGTACCCtaccaatttttgtttttagttgTATAAAATGAT
TTGCTGCATAGATTTATCGAATATTTTTATTGGTTGTCTCTTGTGTATGA
TTTGAAAAGCTAACTTCTTCGTTGATAATTCTTAGTAAAGCTGAACACAA
ATCAGGGGTAGACTAAAATGAAACGTCTTTTTTGTGTGAACCTCCGTGTG
TCCGCCATTTTGACCATTATATTGTCATTCCAGTAAGTCCCTGATTGGTC
ATCTCTTTACAACGCTTTTTTAtagtttattgtttcattttggtatctaa
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028687XLOC_028687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045104-exon-sc0006921-1491911889:256..606TCONS_00045104-exon-sc0006921-1491911889:256..606Clytia hemisphaericaexon
TCONS_00045104-exon-sc0006921-1510915933:256..606TCONS_00045104-exon-sc0006921-1510915933:256..606Clytia hemisphaericaexon
TCONS_00045104-exon-sc0006921-1575043694:256..606TCONS_00045104-exon-sc0006921-1575043694:256..606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006921supercontigsc0006921:256..606 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.550483	0.270165	0	0.300601	0	0	0	0	0.426291	1.57274	1.0125	0.50459	0.498488	0.347494	2.30006	1.21798	1.50635	1.16657	2.12471	1.39399	2.09429	4.82526	2.71555	3.22763	0	0	2.12309	2.25283	2.32928	2.71139
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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