TCONS_00045109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045109
Unique NameTCONS_00045109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045109 ID=TCONS_00045109|Name=TCONS_00045109|organism=Clytia hemisphaerica|type=transcript|length=305bp
gccaaattaaataacggtcaaaatttcttcctttaaggtatttgaCATCA
AAGTGAATTCTTAAATCGAATTTCTTAGAGACGCACAAAATTTTGAGCTG
GTTTTTACCTGGTAGACTTCACGGAATCCCTTTTTGTGGTGTTACCATGC
AGGatatgaaaccacttattttcaCTTtgtaagaaaataaacaaaaagat
tctCATTCAAAATCGGATTCTTGCTCTACAGTTTTTAACAATTTGACTTT
GATAATTCTTTATTGGAAGAACGTactttcgcaagcagaaactttcgaaa
ttcac
Run BLAST on NCBI

transcript from alignment at sc0006942:965..1269

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045109 ID=TCONS_00045109|Name=TCONS_00045109|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0006942:965..1269 (Clytia hemisphaerica)
gtgaatttcgaaagtttctgcttgcgaaagtACGTTCTTCCAATAAAGAA
TTATCAAAGTCAAATTGTTAAAAACTGTAGAGCAAGAATCCGATTTTGAA
TGagaatctttttgtttattttcttacaAAGtgaaaataagtggtttcat
atCCTGCATGGTAACACCACAAAAAGGGATTCCGTGAAGTCTACCAGGTA
AAAACCAGCTCAAAATTTTGTGCGTCTCTAAGAAATTCGATTTAAGAATT
CACTTTGATGtcaaataccttaaaggaagaaattttgaccgttatttaat
ttggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028692XLOC_028692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045109-exon-sc0006942-1491911889:965..1269TCONS_00045109-exon-sc0006942-1491911889:965..1269Clytia hemisphaericaexon
TCONS_00045109-exon-sc0006942-1510915933:965..1269TCONS_00045109-exon-sc0006942-1510915933:965..1269Clytia hemisphaericaexon
TCONS_00045109-exon-sc0006942-1575043694:965..1269TCONS_00045109-exon-sc0006942-1575043694:965..1269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006942supercontigsc0006942:965..1269 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.818103	0.497981	2.75458	2.84853	5.33351	0.622353	2.31265	2.99296	0.491863	0.736769	0	0.62905	0	0.277209	1.42065	0.392542	0.410767	1.42812	2.61221	0.423397	0.769859	0.396468	1.41535	2.53171	2.16153	2.0493	2.08791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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