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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045112 ID=TCONS_00045112|Name=TCONS_00045112|organism=Clytia hemisphaerica|type=transcript|length=1150bp
ttgaaatacacattattagcgcttctttgaagcaagtaaccattcaaata
gtatttatctgacatattttgagttttgtttagaaatattcgCGGaagag
gcccttccaaatttccattgggacttaatttcgcggattttcgcggatga
cacctaAATCCGCGAAACCTGTGAAATTTAATCCttgcaaaagtttatcc
cattaaatatcaaatttagcATCTCACAGGGTTCAAATTGCCTTGACAGG
ATCTACCTTAAGTGCGTTAATTTTCACGTGGACAATTTTCGTGAATTGag
aatctaaaattttcaacctaaTTCCTTTTATTTTCCTAGGGTGTTTTGGC
CAACTTttggatttaaatttttcacgaggactaaatttcgcgaaaagggc
aaaaattgcaaaaattgctaaaattagtacacgcaaaatttttttaaatc
ttaataTATCTATTTAAAATGGACTTACACTGCTTTCACTTTTGCGTATC
AAAAACGAACCTTCATTTTTGTTTGATAATGCAATTTTGGCTTCTTTGCG
AGTCATTTTTTGAATAGAAAACTTGCTTTCGTTGTTTGTTAACTTCACCT
CATTAAAATTTGGGATCTCCTTACAATCGGGTGATAGAGACTTTGCATAA
ATATACAAATTGATATCGGATTCGTCAAGGATCTTAAACGCACGCTCTTC
GTCTGCTAGCTTCAGATAAACATCGTGTGGAAGTATCATTTCCTTCTTTG
GGCTTAATGGAGCACCGCTAACCGCTTGGTCTTTACTCTTGTTATCGTGA
TAGGAGTATGTCCCTTTgaagtcatcattttttttgtcaGTGTCAGCCAC
AAAGCTGTTTCGAATTTGATTCAGATCACTTCTTAAGACCACTTGATCTG
GGTAGGCATTTTGAGGATCGGAGATGGTCTTTTCTGGTTCATTCAAACCA
TAACTCAAAACTTCATCAGGATTTTTATAAGTATCAGTGTCTTGTTTACA
CTTGGACATCAAGACTTCGTCAGGGTTGCCATAGTGACTACCGCCAGTTG
CTTTGTCAAGGAGAACTGTGTCAGGATCTGCATAAAGGTCGGTGTCTTTT
GCTCGAATTTCCACATCTTGAATTTCTTTTACATAAATAACCGGTATGAT Run BLAST on NCBI protein sequence of TCONS_00045112-protein >TCONS_00045112-protein ID=TCONS_00045112-protein|Name=TCONS_00045112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
IIPVIYVKEIQDVEIRAKDTDLYADPDTVLLDKATGGSHYGNPDEVLMSK
CKQDTDTYKNPDEVLSYGLNEPEKTISDPQNAYPDQVVLRSDLNQIRNSF
VADTDKKNDDFKGTYSYHDNKSKDQAVSGAPLSPKKEMILPHDVYLKLAD
EERAFKILDESDINLYIYAKSLSPDCKEIPNFNEVKLTNNESKFSIQKMT
RKEAKIALSNKNEGSFLIRKSESSVSPF Run BLAST on NCBI transcript from alignment at sc0006951:3..1152 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045112 ID=TCONS_00045112|Name=TCONS_00045112|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at sc0006951:3..1152 (Clytia hemisphaerica)
ATCATACCGGTTATTTATGTAAAAGAAATTCAAGATGTGGAAATTCGAGC
AAAAGACACCGACCTTTATGCAGATCCTGACACAGTTCTCCTTGACAAAG
CAACTGGCGGTAGTCACTATGGCAACCCTGACGAAGTCTTGATGTCCAAG
TGTAAACAAGACACTGATACTTATAAAAATCCTGATGAAGTTTTGAGTTA
TGGTTTGAATGAACCAGAAAAGACCATCTCCGATCCTCAAAATGCCTACC
CAGATCAAGTGGTCTTAAGAAGTGATCTGAATCAAATTCGAAACAGCTTT
GTGGCTGACACtgacaaaaaaaatgatgacttcAAAGGGACATACTCCTA
TCACGATAACAAGAGTAAAGACCAAGCGGTTAGCGGTGCTCCATTAAGCC
CAAAGAAGGAAATGATACTTCCACACGATGTTTATCTGAAGCTAGCAGAC
GAAGAGCGTGCGTTTAAGATCCTTGACGAATCCGATATCAATTTGTATAT
TTATGCAAAGTCTCTATCACCCGATTGTAAGGAGATCCCAAATTTTAATG
AGGTGAAGTTAACAAACAACGAAAGCAAGTTTTCTATTCAAAAAATGACT
CGCAAAGAAGCCAAAATTGCATTATCAAACAAAAATGAAGGTTCGTTTTT
GATACGCAAAAGTGAAAGCAGTGTAAGTCCATTTTAAATAGATAtattaa
gatttaaaaaaattttgcgtgtactaattttagcaatttttgcaattttt
gcccttttcgcgaaatttagtcctcgtgaaaaatttaaatccaaAAGTTG
GCCAAAACACCCTAGGAAAATAAAAGGAAttaggttgaaaattttagatt
ctCAATTCACGAAAATTGTCCACGTGAAAATTAACGCACTTAAGGTAGAT
CCTGTCAAGGCAATTTGAACCCTGTGAGATgctaaatttgatatttaatg
ggataaacttttgcaaGGATTAAATTTCACAGGTTTCGCGGATTtaggtg
tcatccgcgaaaatccgcgaaattaagtcccaatggaaatttggaagggc
ctcttCCGcgaatatttctaaacaaaactcaaaatatgtcagataaatac
tatttgaatggttacttgcttcaaagaagcgctaataatgtgtatttcaa
Coding sequence (CDS) from alignment at sc0006951:3..1152 >TCONS_00045112 ID=TCONS_00045112|Name=TCONS_00045112|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at sc0006951:3..1152 (Clytia hemisphaerica)
ATCATACCGGTTATTTATGTAAAAGAAATTCAAGATGTGGAAATTCGAGC
AAAAGACACCGACCTTTATGCAGATCCTGACACAGTTCTCCTTGACAAAG
CAACTGGCGGTAGTCACTATGGCAACCCTGACGAAGTCTTGATGTCCAAG
TGTAAACAAGACACTGATACTTATAAAAATCCTGATGAAGTTTTGAGTTA
TGGTTTGAATGAACCAGAAAAGACCATCTCCGATCCTCAAAATGCCTACC
CAGATCAAGTGGTCTTAAGAAGTGATCTGAATCAAATTCGAAACAGCTTT
GTGGCTGACACtgacaaaaaaaatgatgacttcAAAGGGACATACTCCTA
TCACGATAACAAGAGTAAAGACCAAGCGGTTAGCGGTGCTCCATTAAGCC
CAAAGAAGGAAATGATACTTCCACACGATGTTTATCTGAAGCTAGCAGAC
GAAGAGCGTGCGTTTAAGATCCTTGACGAATCCGATATCAATTTGTATAT
TTATGCAAAGTCTCTATCACCCGATTGTAAGGAGATCCCAAATTTTAATG
AGGTGAAGTTAACAAACAACGAAAGCAAGTTTTCTATTCAAAAAATGACT
CGCAAAGAAGCCAAAATTGCATTATCAAACAAAAATGAAGGTTCGTTTTT
GATACGCAAAAGTGAAAGCAGTGTAAGTCCATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045112-exon-sc0006951-1491911889:3..1152 | TCONS_00045112-exon-sc0006951-1491911889:3..1152 | Clytia hemisphaerica | exon |
| TCONS_00045112-exon-sc0006951-1510915933:3..1152 | TCONS_00045112-exon-sc0006951-1510915933:3..1152 | Clytia hemisphaerica | exon |
| TCONS_00045112-exon-sc0006951-1575043694:3..1152 | TCONS_00045112-exon-sc0006951-1575043694:3..1152 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006951 | supercontig | sc0006951:3..1152 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000980 | SH2 |
Blast
The following BLAST results are available for this feature:
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