TCONS_00045124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045124
Unique NameTCONS_00045124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045124 ID=TCONS_00045124|Name=TCONS_00045124|organism=Clytia hemisphaerica|type=transcript|length=353bp
TAGATCTCCGGACTTTTTCGCGACTCCTATTTATATGGCATATACACAAC
TGCACTAAACCTTTTAAAACAAATGACTTCAGAGAAGATGGACTTACAAA
ACCAACAACAGGTATTGATCCATGATTAAGCCGTTAACCTTTTGGCTATT
TCTACACGTGAATAATTTTATTGCGTACAAATATCTCCCGTTGAGTCCCG
TTGAGAAGTGATGGTGTATCAAGGTTTAACCTTAAACCAGTAAAACCTCG
TTAAActttattaaattaaaaaaaaacattcctcgGAGCTGCTCGCTTTA
ATAAAATAAAGCACAGCTAAGTCCACTACCTGTAAGACAAAACCTATAAA
CCG
Run BLAST on NCBI

transcript from alignment at sc0007004:141..757-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045124 ID=TCONS_00045124|Name=TCONS_00045124|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at sc0007004:141..757- (Clytia hemisphaerica)
TAGATCTCCGGACTTTTTCGCGACTCCTATTTATATGGCATATACACAAC
TGCACTAAACCTTTTAAAACAAGTAAGAATATTCGCATTTTCTTTGCACG
GAAACTCTTAATTGTGCTTCTTGTATCNGGACTTTTTCGCGACTCCTATT
TATATGGCATATACACAACTGCACTAAACCTTTTAAAACAAGTAAGAATA
TTCAACCGTCTGTATTTCTAGATATTACTTAAACTTTAAGTAGTCAAGAA
TTTGATGCCGCACTGAAACTGGCTTAAATCTGTGCGTTGAAAAGAATTTT
GTTCATGATTGACAATTTGATTTCTTTTGCTTTTAGATGACTTCAGAGAA
GATGGACTTACAAAACCAACAACAGGTATTGATCCATGATTAAGCCGTTA
ACCTTTTGGCTATTTCTACACGTGAATAATTTTATTGCGTACAAATATCT
CCCGTTGAGTCCCGTTGAGAAGTGATGGTGTATCAAGGTTTAACCTTAAA
CCAGTAAAACCTCGTTAAACTTTATTAAATTAAAAAAAAACATTCCTCGG
AGCTGCTCGCTTTAATAAAATAAAGCACAGCTAAGTCCACTACCTGTAAG
ACAAAACCTATAAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028707XLOC_028707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045124-exon-sc0007004-1575043694:686..757TCONS_00045124-exon-sc0007004-1575043694:686..757Clytia hemisphaericaexon
TCONS_00045124-exon-sc0007004-1575043694:141..421TCONS_00045124-exon-sc0007004-1575043694:141..421Clytia hemisphaericaexon
TCONS_00045124-exon-sc0007004-1510915933:686..757TCONS_00045124-exon-sc0007004-1510915933:686..757Clytia hemisphaericaexon
TCONS_00045124-exon-sc0007004-1510915933:141..421TCONS_00045124-exon-sc0007004-1510915933:141..421Clytia hemisphaericaexon
TCONS_00045124-exon-sc0007004-1491911889:686..757TCONS_00045124-exon-sc0007004-1491911889:686..757Clytia hemisphaericaexon
TCONS_00045124-exon-sc0007004-1491911889:141..421TCONS_00045124-exon-sc0007004-1491911889:141..421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007004supercontigsc0007004:141..757 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.7243	17.5384	20.3638	18.5582	0	0	0	0	7.26648	13.3725	6.73944	8.6964	5.40721	7.82759	7.41463	10.5093	12.5767	13.2698	6.2856	4.65901	5.24056	8.36562	11.017	11.557	0	0	4.05392	3.96591	9.84437	6.68657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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