TCONS_00045125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045125
Unique NameTCONS_00045125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045125 ID=TCONS_00045125|Name=TCONS_00045125|organism=Clytia hemisphaerica|type=transcript|length=1215bp
TACCATTTGTGgaaaaaaagatgaagaaaagtTTCAGCAAAGGCCATCGA
TTCTGAAAGATTGAGATCAGCGTGAAATtcgaaatgaaaaaatcaaaaag
aaattataataGAGAGAATAAAAAACGTCCTAGCTTTAAAAAAAGGTATA
CCATAATTGGTCGTAAAATTAACCAGTCACACCACAAACAATACGGTTTC
caacaaatcaaaaattccAATTCCCAGTAAACCTTTCAACTCTTGTAAAC
CTCCTTGATATGGTATAAAATAAAACTGGTAGAAAAACCAATAACATTAC
AGGTCCATCTCGAATAGGTACTGATAATTCTGTTATTGATATAATCCCGT
AACCATGAGCAACACAATAACATGCTAGCACACCCATATGTCTCGGTGTC
CTTAaatctttgaaataattttcttgATCTAAAGTACTTAGAAATATTGC
AACGCCAATAACTGATAAGAATAACATCAAATAAGGAAAGATGAAATAAA
TAACACCAGCAAAACAAGTGTGTACTACTCCAACAATTGGTATAATATAA
AGCCCAGCATATAAGGACTTGTTTGGTCTCATTCTAGTCACTTTTGGTAG
TATCACCCCTCTGAATATTATCATTAAAACTAGGCAATATATCAAGTACA
TAAATATGGCTGTATATAACGGATAAACAGCTTCCTGTGTACATCGAATC
ACCGTCACATAGTCTGGTTTGGGGTTATAAAAAACTGTATACCAATCTTT
GATAGATTTAACACCACACGAATGTAAAGAGAATTTGCCTCTTGGTTCGA
AAGATAATATCATAAGTATAAAAGAAATCACAGACTCCAAGATGATTGAT
AAATGGAATAACCAACTTTTGCGTTCTGTCGAGTGAAACATGTCAACCGC
gtaaaaattcaaaaccatAATGCAAATCATCATAAAGCCAAGAAACAACC
AATCATATAACACCAACAATGAATCACACTTTAAACAATGGAAGGAATTT
GTTCGGAAACCACGACTACATGCTTCACATGGTTGGTTGCAGCTGCTGGA
TAGGTTATGTTCAGCCGGTGCCCGACCGCAATATAATCCAGGACATTTTA
TTGGGCAATCGATATTCATACTCAGAGCTTGTATGGTAAACATACTAAAA
CTGAACATGATAAGTAAGCAGTGCATCAATTTCATCCTCTTCATTTTGAT
TATTCATTTCCTGTA
Run BLAST on NCBI

protein sequence of TCONS_00045125-protein

>TCONS_00045125-protein ID=TCONS_00045125-protein|Name=TCONS_00045125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MKRMKLMHCLLIMFSFSMFTIQALSMNIDCPIKCPGLYCGRAPAEHNLSS
SCNQPCEACSRGFRTNSFHCLKCDSLLVLYDWLFLGFMMICIMVLNFYAV
DMFHSTERKSWLFHLSIILESVISFILMILSFEPRGKFSLHSCGVKSIKD
WYTVFYNPKPDYVTVIRCTQEAVYPLYTAIFMYLIYCLVLMIIFRGVILP
KVTRMRPNKSLYAGLYIIPIVGVVHTCFAGVIYFIFPYLMLFLSVIGVAI
FLSTLDQENYFKDLRTPRHMGVLACYCVAHGYGIISITELSVPIRDGPVM
LLVFLPVLFYTISRRFTRVERFTGNWNF
Run BLAST on NCBI

transcript from alignment at sc0007006:9..1223

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045125 ID=TCONS_00045125|Name=TCONS_00045125|organism=Clytia hemisphaerica|type=transcript|length=1215bp|location=Sequence derived from alignment at sc0007006:9..1223 (Clytia hemisphaerica)
TACAGGAAATGAATAATCAAAATGAAGAGGATGAAATTGATGCACTGCTT
ACTTATCATGTTCAGTTTTAGTATGTTTACCATACAAGCTCTGAGTATGA
ATATCGATTGCCCAATAAAATGTCCTGGATTATATTGCGGTCGGGCACCG
GCTGAACATAACCTATCCAGCAGCTGCAACCAACCATGTGAAGCATGTAG
TCGTGGTTTCCGAACAAATTCCTTCCATTGTTTAAAGTGTGATTCATTGT
TGGTGTTATATGATTGGTTGTTTCTTGGCTTTATGATGATTTGCATTatg
gttttgaatttttacGCGGTTGACATGTTTCACTCGACAGAACGCAAAAG
TTGGTTATTCCATTTATCAATCATCTTGGAGTCTGTGATTTCTTTTATAC
TTATGATATTATCTTTCGAACCAAGAGGCAAATTCTCTTTACATTCGTGT
GGTGTTAAATCTATCAAAGATTGGTATACAGTTTTTTATAACCCCAAACC
AGACTATGTGACGGTGATTCGATGTACACAGGAAGCTGTTTATCCGTTAT
ATACAGCCATATTTATGTACTTGATATATTGCCTAGTTTTAATGATAATA
TTCAGAGGGGTGATACTACCAAAAGTGACTAGAATGAGACCAAACAAGTC
CTTATATGCTGGGCTTTATATTATACCAATTGTTGGAGTAGTACACACTT
GTTTTGCTGGTGTTATTTATTTCATCTTTCCTTATTTGATGTTATTCTTA
TCAGTTATTGGCGTTGCAATATTTCTAAGTACTTTAGATcaagaaaatta
tttcaaagattTAAGGACACCGAGACATATGGGTGTGCTAGCATGTTATT
GTGTTGCTCATGGTTACGGGATTATATCAATAACAGAATTATCAGTACCT
ATTCGAGATGGACCTGTAATGTTATTGGTTTTTCTACCAGTTTTATTTTA
TACCATATCAAGGAGGTTTACAAGAGTTGAAAGGTTTACTGGGAATTgga
atttttgatttgttgGAAACCGTATTGTTTGTGGTGTGACTGGTTAATTT
TACGACCAATTATGGTATACCTTTTTTTAAAGCTAGGACGTTTTTTATTC
TCTCtattataatttctttttgattttttcatttcgaATTTCACGCTGAT
CTCAATCTTTCAGAATCGATGGCCTTTGCTGAAacttttcttcatctttt
tttcCACAAATGGTA

Coding sequence (CDS) from alignment at sc0007006:9..1223

>TCONS_00045125 ID=TCONS_00045125|Name=TCONS_00045125|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at sc0007006:9..1223 (Clytia hemisphaerica)
ATGAAGAGGATGAAATTGATGCACTGCTTACTTATCATGTTCAGTTTTAG
TATGTTTACCATACAAGCTCTGAGTATGAATATCGATTGCCCAATAAAAT
GTCCTGGATTATATTGCGGTCGGGCACCGGCTGAACATAACCTATCCAGC
AGCTGCAACCAACCATGTGAAGCATGTAGTCGTGGTTTCCGAACAAATTC
CTTCCATTGTTTAAAGTGTGATTCATTGTTGGTGTTATATGATTGGTTGT
TTCTTGGCTTTATGATGATTTGCATTatggttttgaatttttacGCGGTT
GACATGTTTCACTCGACAGAACGCAAAAGTTGGTTATTCCATTTATCAAT
CATCTTGGAGTCTGTGATTTCTTTTATACTTATGATATTATCTTTCGAAC
CAAGAGGCAAATTCTCTTTACATTCGTGTGGTGTTAAATCTATCAAAGAT
TGGTATACAGTTTTTTATAACCCCAAACCAGACTATGTGACGGTGATTCG
ATGTACACAGGAAGCTGTTTATCCGTTATATACAGCCATATTTATGTACT
TGATATATTGCCTAGTTTTAATGATAATATTCAGAGGGGTGATACTACCA
AAAGTGACTAGAATGAGACCAAACAAGTCCTTATATGCTGGGCTTTATAT
TATACCAATTGTTGGAGTAGTACACACTTGTTTTGCTGGTGTTATTTATT
TCATCTTTCCTTATTTGATGTTATTCTTATCAGTTATTGGCGTTGCAATA
TTTCTAAGTACTTTAGATcaagaaaattatttcaaagattTAAGGACACC
GAGACATATGGGTGTGCTAGCATGTTATTGTGTTGCTCATGGTTACGGGA
TTATATCAATAACAGAATTATCAGTACCTATTCGAGATGGACCTGTAATG
TTATTGGTTTTTCTACCAGTTTTATTTTATACCATATCAAGGAGGTTTAC
AAGAGTTGAAAGGTTTACTGGGAATTggaatttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028708XLOC_028708Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045125-proteinTCONS_00045125-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045125-exon-sc0007006-1491911889:9..1223TCONS_00045125-exon-sc0007006-1491911889:9..1223Clytia hemisphaericaexon
TCONS_00045125-exon-sc0007006-1510915933:9..1223TCONS_00045125-exon-sc0007006-1510915933:9..1223Clytia hemisphaericaexon
TCONS_00045125-exon-sc0007006-1575043694:9..1223TCONS_00045125-exon-sc0007006-1575043694:9..1223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007006supercontigsc0007006:9..1223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61819	1.89686	1.01129	0.683801	11.2698	6.97839	7.79246	8.43512	2.56431	4.95612	3.21628	2.02685	2.89244	1.71729	2.33185	2.96175	3.18449	3.93211	2.47711	2.02298	2.66654	2.77418	20.6132	17.731	2.89713	5.24191	8.8615	8.00903	20.6696	20.7578
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008485DUF766
Blast
[Close]
BLAST of TCONS_00045125 vs. Swiss-Prot (Human)
Match: JKAMP (JNK1/MAPK8-associated membrane protein OS=Homo sapiens GN=JKAMP PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 8.490e-60
Identity = 115/304 (37.83%), Postives = 179/304 (58.88%), Query Frame = -1 
Query:  232 LSMNIDCPIKCPGLYCGRAPAEHNLSSSCNQPCEACSRGFRTNSF-HCLKCDSLLVLYDWLFLGFMMICIMVLNFYAVDMFHSTERKSWLF-HLSIILESVISFILMILSFEPRGKFSLHSCGVKSIKDWYTVFYNPKPDYVTVIRCTQEAVYPLYTAIFMYLIYCLVLMIIFRGVILPKVT----RMRPNKSLYAGLYIIPIVGVVHTCFAGVIYFIFPYLMLFLSVIGVAIFLSTLDQENYFKDLRTPRHMGVLACYCVAHGYGIISITELSVPIRDGXXXXXXXXXXXFYTISRRFTRVER 1125
            L  N+     C GLYCG+     N S+     C  C RG RTN+  +C  C     LYDWL+LGFM +  +VL+++ ++ +   +  S LF H++ + E  ++ I+ +L  +P G   + SC V  + DWYT+ YNP PDYVT + CT EAVYPLYT +F+Y  +CLVLM++ R +++ K+     +    KS+YA LY  PI+ V+     G++Y+ FPY++L LS++ +A+++S  + EN +  L   + + VL  + + H YGIISI+ +    +D P++ LV  P LFY  + +FT   R
Sbjct:   14 LEKNLQAAHGCLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEPSR 317
The following BLAST results are available for this feature:
BLAST of TCONS_00045125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JKAMP8.490e-6037.83JNK1/MAPK8-associated membrane protein OS=Homo sap... [more]
back to top