TCONS_00045134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045134
Unique NameTCONS_00045134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045134 ID=TCONS_00045134|Name=TCONS_00045134|organism=Clytia hemisphaerica|type=transcript|length=316bp
CCTCTAAACTACAGCagattttccagtcatgctcgGTCAGCCAAGCCACT
GCAGGTTTGGTAGGATATGAAACGTCTACACCTGAGCTCCCACGTAAGAA
GTAATTCCACTCATTGTCCGAAATTTGACCAGCTTGTTGCATAATGTCTG
TACAGATCATGAATGAGAATACCAGTTTAGCTTTCTCGAACAAACCccta
ttgaaagaaaaaaacattaatgaAACAAGTTTGCCTAATTTTGAACCCTG
GCAATCCTGGTCGCTCTAATAGTGATGTCATTAGTGTGGAGCTGGAAACT
TATTACGTTAGTGCGA
Run BLAST on NCBI

transcript from alignment at sc0007034:641..956

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045134 ID=TCONS_00045134|Name=TCONS_00045134|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at sc0007034:641..956 (Clytia hemisphaerica)
TCGCACTAACGTAATAAGTTTCCAGCTCCACACTAATGACATCACTATTA
GAGCGACCAGGATTGCCAGGGTTCAAAATTAGGCAAACTTGTTtcattaa
tgtttttttctttcaataggGGTTTGTTCGAGAAAGCTAAACTGGTATTC
TCATTCATGATCTGTACAGACATTATGCAACAAGCTGGTCAAATTTCGGA
CAATGAGTGGAATTACTTCTTACGTGGGAGCTCAGGTGTAGACGTTTCAT
ATCCTACCAAACCTGCAGTGGCTTGGCTGACcgagcatgactggaaaatc
tGCTGTAGTTTAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028717XLOC_028717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045134-exon-sc0007034-1491911889:641..956TCONS_00045134-exon-sc0007034-1491911889:641..956Clytia hemisphaericaexon
TCONS_00045134-exon-sc0007034-1510915933:641..956TCONS_00045134-exon-sc0007034-1510915933:641..956Clytia hemisphaericaexon
TCONS_00045134-exon-sc0007034-1575043694:641..956TCONS_00045134-exon-sc0007034-1575043694:641..956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007034supercontigsc0007034:641..956 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.989	2.58612	3.37807	2.9377	49.6221	38.1523	19.1788	27.9299	7.26306	9.68851	8.06049	5.07787	0.66141	0.686881	1.12942	1.21204	2.73741	0.255069	2.46674	2.95002	2.5641	0.938009	1.52036	2.76446	19.9313	21.6	5.45462	6.30643	0.735878	1.87436
Blast
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BLAST of TCONS_00045134 vs. Swiss-Prot (Human)
Match: DYH6 (Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 9.167e-21
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = -1 
Query:    2 FFSFNRGLFEKAKLVFSFMICTDIMQQAGQISDNEWNYFLRGSSGVDVSYPTKPAVAWLTEHDWKICCSLE 214
            + + +RGLFE+ KL++SFM+C ++M+Q G +SD EWN+FLRGS+G++   P KP   WL    W  CC LE
Sbjct: 3355 YVNVSRGLFEQHKLIYSFMLCVEMMRQQGTLSDAEWNFFLRGSAGLEKERPPKPEAPWLPTATWFACCDLE 3425
The following BLAST results are available for this feature:
BLAST of TCONS_00045134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH69.167e-2149.30Dynein heavy chain 6, axonemal OS=Homo sapiens GN=... [more]
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