TCONS_00045139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045139
Unique NameTCONS_00045139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045139 ID=TCONS_00045139|Name=TCONS_00045139|organism=Clytia hemisphaerica|type=transcript|length=734bp
NGAGACTGAAGAGGGTACGAAAAGAAAAAGGATGAAAGGAACAAAAGAAA
GCTTTGCAATATGGTAAGAAATCCTTCTTTTTAAGAACGTATCTAATTAC
TTAGTATCGAGAATCAAGAGCAAGGTGTGAATTGAAAGCTTCATGTGTGT
TCGAAAAATTCATAtaaaggttaagttttcaaaagtatttGTAAAATCGG
GATAGCATTGTAGTGATCTCAAAAATTCATACTACTATACTACACTTCTC
TTATAAACATAACACGAGGAAAGATGGAACGATACGTTGTTTTTTTAACa
gctaaaaattttagaaactttgcattttgattttttatccgTCCTCAAGG
GAGCAACTGATAAGTCTTAAGAGTCGAAGAGAAAAGGAGCTGGAAATCTA
AAGAGAATTTGATTGAACTTAGTTGAAGTTATTTGATTGAAAAGTATGCG
TGATAATCTTTTAATTCTTTGTTTAACGACAACGTGACAATTTGTCATAC
TTTCTATGAGTCTCCAGGGACCTAAAAGTTTATAGACTTCTATTTTTTTC
ACTTAACTGTAATTTTATTGCTTATACTTCAAAAATGCATTCGCATTGca
aatggaaaaatgaaaactgaCAGATTCTTGTcagattaaaattttttaac
acTGCAAAGCTTTTGTTATCGTCTGAACGCAGAAAATTTTCGGacattct
ttttcttcttggcATTCGCAATTAAATGAGTTTT
Run BLAST on NCBI

transcript from alignment at sc0007043:1..734

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045139 ID=TCONS_00045139|Name=TCONS_00045139|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at sc0007043:1..734 (Clytia hemisphaerica)
AAAACTCATTTAATTGCGAATgccaagaagaaaaagaatgtCCGAAAATT
TTCTGCGTTCAGACGATAACAAAAGCTTTGCAgtgttaaaaaattttaat
ctgACAAGAATCTGtcagttttcatttttccatttgCAATGCGAATGCAT
TTTTGAAGTATAAGCAATAAAATTACAGTTAAGTGAAAAAAATAGAAGTC
TATAAACTTTTAGGTCCCTGGAGACTCATAGAAAGTATGACAAATTGTCA
CGTTGTCGTTAAACAAAGAATTAAAAGATTATCACGCATACTTTTCAATC
AAATAACTTCAACTAAGTTCAATCAAATTCTCTTTAGATTTCCAGCTCCT
TTTCTCTTCGACTCTTAAGACTTATCAGTTGCTCCCTTGAGGAcggataa
aaaatcaaaatgcaaagtttctaaaatttttagctGTTAAAAAAACAACG
TATCGTTCCATCTTTCCTCGTGTTATGTTTATAAGAGAAGTGTAGTATAG
TAGTATGAATTTTTGAGATCACTACAATGCTATCCCGATTTTACaaatac
ttttgaaaacttaacctttaTATGAATTTTTCGAACACACATGAAGCTTT
CAATTCACACCTTGCTCTTGATTCTCGATACTAAGTAATTAGATACGTTC
TTAAAAAGAAGGATTTCTTACCATATTGCAAAGCTTTCTTTTGTTCCTTT
CATCCTTTTTCTTTTCGTACCCTCTTCAGTCTCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028722XLOC_028722Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045139-exon-sc0007043-1491911889:1..734TCONS_00045139-exon-sc0007043-1491911889:1..734Clytia hemisphaericaexon
TCONS_00045139-exon-sc0007043-1510915933:1..734TCONS_00045139-exon-sc0007043-1510915933:1..734Clytia hemisphaericaexon
TCONS_00045139-exon-sc0007043-1575043694:1..734TCONS_00045139-exon-sc0007043-1575043694:1..734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007043supercontigsc0007043:1..734 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.344	15.5761	6.08787	3.66297	0	0	0.175935	0.126451	0.621175	0.372959	0.0808559	0.571164	0.737019	0.468097	0.0399347	0	1.45312	1.34328	0.0718355	0	3.44476	2.43715	2.28446	2.54027	0.100754	0.202768	0.236192	0.267647	1.96882	0.946084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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