TCONS_00045151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045151
Unique NameTCONS_00045151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045151 ID=TCONS_00045151|Name=TCONS_00045151|organism=Clytia hemisphaerica|type=transcript|length=309bp
CTGTCGAAAAACCGGTGGTTTGATAAGTCTTGCCAAGCAGTCATCGGCAC
AACTGGTGTTGTTATTACCACTGAAGATCATGTCCATTTCGATGGGAACG
TTGGATGTCAGATCCTTCAAGATTGTGCTGATTATTTGACAGAACACAAA
TTTGATATACAGGTTCGTAGTTTGTGAGGCTTTTGTATTTTTACATCGCA
AAATACCGGGTGCgtgtcaaaaaagtttctctcttctAGCTTGGTTTTCT
CGAGTTCTACAAATTATACAAgaacgaatttttttacattgaaaagaaga
aggataAAC
Run BLAST on NCBI

transcript from alignment at sc0007084:1..538+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045151 ID=TCONS_00045151|Name=TCONS_00045151|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at sc0007084:1..538+ (Clytia hemisphaerica)
CTGTCGAAAAACCGGTGGTTTGATAAGTCTTGCCAAGCAGTCATCGGCAC
AACTGGTGTTGTTATTACCACTGAAGATGTAAGCGGCTTTTAAGTGGGAA
AGATTTTGGGAAAACTTCTGCGAAGGGATGTTAAAATTGAGATGTCCTTT
ATAGTTCAAAGACAAGGATTGCTGAGTGCTGTCGACCCAGCATTACCCAG
CATATTCGACAAGCTTTTCAGTAGTACTCTGGAAACTTCTTCAAAATCAT
CCCTTCTTgaggaaaatgttaaaattcagATTCACTTTAGCTTTCTAACC
TTTTCAGCATGTCCATTTCGATGGGAACGTTGGATGTCAGATCCTTCAAG
ATTGTGCTGATTATTTGACAGAACACAAATTTGATATACAGGTTCGTAGT
TTGTGAGGCTTTTGTATTTTTACATCGCAAAATACCGGGTGCgtgtcaaa
aaagtttctctcttctAGCTTGGTTTTCTCGAGTTCTACAAATTATACAA
gaacgaatttttttacattgaaaagaagaaggataAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028734XLOC_028734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045151-exon-sc0007084-1491911889:1..78TCONS_00045151-exon-sc0007084-1491911889:1..78Clytia hemisphaericaexon
TCONS_00045151-exon-sc0007084-1510915933:1..78TCONS_00045151-exon-sc0007084-1510915933:1..78Clytia hemisphaericaexon
TCONS_00045151-exon-sc0007084-1575043694:1..78TCONS_00045151-exon-sc0007084-1575043694:1..78Clytia hemisphaericaexon
TCONS_00045151-exon-sc0007084-1491911889:308..538TCONS_00045151-exon-sc0007084-1491911889:308..538Clytia hemisphaericaexon
TCONS_00045151-exon-sc0007084-1510915933:308..538TCONS_00045151-exon-sc0007084-1510915933:308..538Clytia hemisphaericaexon
TCONS_00045151-exon-sc0007084-1575043694:308..538TCONS_00045151-exon-sc0007084-1575043694:308..538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007084supercontigsc0007084:1..538 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.54604	5.87851	3.21201	3.53525	0	0	0	0	23.3078	31.4614	33.052	16.7677	20.5177	20.3282	22.7532	33.7094	21.8284	16.9165	7.91599	11.8336	10.6284	11.0372	6.09873	8.50177	0	0	3.88986	2.07568	3.93583	4.00999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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