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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045152 ID=TCONS_00045152|Name=TCONS_00045152|organism=Clytia hemisphaerica|type=transcript|length=906bp
TGCAGAAACAAGTTGTTCTCCTGTCGGGCCAGCGTAAGGGATACGTAACC
AGAGTGTTGTCGGTATGGTATTATCAGCGTTGTCATTTTAAGAGTGTCGG
GGACTGGTTGCGGTTTTAATGATTTTGTTGACGACAAAGCGAGGAAAACC
ATTCCAAGAAGCGAACTTTTTGATCAGGTTAATTTCATTCTTCAATTTAG
CAGGATGACAAAGTTTGGTGGCACGGTTGGCAAGGCTAGAAATCCATGCT
TTTCGGTAAGACCAAGGAGCGTAGCTATCAAAATTTGTATATAAGCCAGT
GTTTGTATCTTTTCTAAATATAGATAGACCATCTGGTGAAATCTCAAGAT
CTAAGAAGTACAGTGTTTCATCTTCAAATTTGTCAACTgtaaattgaaga
tttttatcaaatttgttAAGGGAGCAATGAACTTTATCGATATCTACTGG
ACGAATGACAAGGAGTGTATCATCAACGTATCTTGAGTAAAACTTTACGA
TACCAGAATCAATATAAGGTTTAATGACAGATTGTTCGAGTTCTGTCATT
ATGATATTTGCTAGTACAGGGCCAAGTGAACTTCCCATACTAACACCATC
TAACTGTTCATAGAGAATGTTGTTTGCTGAAAATACGGTTTTTTACAGGt
gtcttgaattaattttctgagtgtgttttttgagattttagtttGTAACA
AGTTCTTGTTATAAATTCGATCGATAATGAtgtttattaatttcgcttag
cgaaagtattacgatagcctttctgcggcggcggcggtgtcatcggaaaa
aaaattagaaaacgaaactgcttgatacggtggacgaactcactaaattt
aatttacaaattacacgctcgtataaccacggacgattttcgcagGTTTT
CTTTGG Run BLAST on NCBI protein sequence of TCONS_00045152-protein >TCONS_00045152-protein ID=TCONS_00045152-protein|Name=TCONS_00045152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MGSSLGPVLANIIMTELEQSVIKPYIDSGIVKFYSRYVDDTLLVIRPVDI
DKVHCSLNKFDKNLQFTVDKFEDETLYFLDLEISPDGLSIFRKDTNTGLY
TNFDSYAPWSYRKAWISSLANRATKLCHPAKLKNEINLIKKFASWNGFPR
FVVNKIIKTATSPRHS Run BLAST on NCBI transcript from alignment at sc0007087:272..1177 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045152 ID=TCONS_00045152|Name=TCONS_00045152|organism=Clytia hemisphaerica|type=transcript|length=906bp|location=Sequence derived from alignment at sc0007087:272..1177 (Clytia hemisphaerica)
CCAAAGAAAACctgcgaaaatcgtccgtggttatacgagcgtgtaatttg
taaattaaatttagtgagttcgtccaccgtatcaagcagtttcgttttct
aattttttttccgatgacaccgccgccgccgcagaaaggctatcgtaata
ctttcgctaagcgaaattaataaacaTCATTATCGATCGAATTTATAACA
AGAACTTGTTACaaactaaaatctcaaaaaacacactcagaaaattaatt
caagacaCCTGTAAAAAACCGTATTTTCAGCAAACAACATTCTCTATGAA
CAGTTAGATGGTGTTAGTATGGGAAGTTCACTTGGCCCTGTACTAGCAAA
TATCATAATGACAGAACTCGAACAATCTGTCATTAAACCTTATATTGATT
CTGGTATCGTAAAGTTTTACTCAAGATACGTTGATGATACACTCCTTGTC
ATTCGTCCAGTAGATATCGATAAAGTTCATTGCTCCCTTaacaaatttga
taaaaatcttcaatttacAGTTGACAAATTTGAAGATGAAACACTGTACT
TCTTAGATCTTGAGATTTCACCAGATGGTCTATCTATATTTAGAAAAGAT
ACAAACACTGGCTTATATACAAATTTTGATAGCTACGCTCCTTGGTCTTA
CCGAAAAGCATGGATTTCTAGCCTTGCCAACCGTGCCACCAAACTTTGTC
ATCCTGCTAAATTGAAGAATGAAATTAACCTGATCAAAAAGTTCGCTTCT
TGGAATGGTTTTCCTCGCTTTGTCGTCAACAAAATCATTAAAACCGCAAC
CAGTCCCCGACACTCTTAAAATGACAACGCTGATAATACCATACCGACAA
CACTCTGGTTACGTATCCCTTACGCTGGCCCGACAGGAGAACAACTTGTT
TCTGCA Coding sequence (CDS) from alignment at sc0007087:272..1177 >TCONS_00045152 ID=TCONS_00045152|Name=TCONS_00045152|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0007087:272..1177 (Clytia hemisphaerica)
ATGGGAAGTTCACTTGGCCCTGTACTAGCAAATATCATAATGACAGAACT
CGAACAATCTGTCATTAAACCTTATATTGATTCTGGTATCGTAAAGTTTT
ACTCAAGATACGTTGATGATACACTCCTTGTCATTCGTCCAGTAGATATC
GATAAAGTTCATTGCTCCCTTaacaaatttgataaaaatcttcaatttac
AGTTGACAAATTTGAAGATGAAACACTGTACTTCTTAGATCTTGAGATTT
CACCAGATGGTCTATCTATATTTAGAAAAGATACAAACACTGGCTTATAT
ACAAATTTTGATAGCTACGCTCCTTGGTCTTACCGAAAAGCATGGATTTC
TAGCCTTGCCAACCGTGCCACCAAACTTTGTCATCCTGCTAAATTGAAGA
ATGAAATTAACCTGATCAAAAAGTTCGCTTCTTGGAATGGTTTTCCTCGC
TTTGTCGTCAACAAAATCATTAAAACCGCAACCAGTCCCCGACACTCTTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045152-exon-sc0007087-1491911889:272..1177 | TCONS_00045152-exon-sc0007087-1491911889:272..1177 | Clytia hemisphaerica | exon |
| TCONS_00045152-exon-sc0007087-1510915933:272..1177 | TCONS_00045152-exon-sc0007087-1510915933:272..1177 | Clytia hemisphaerica | exon |
| TCONS_00045152-exon-sc0007087-1575043694:272..1177 | TCONS_00045152-exon-sc0007087-1575043694:272..1177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007087 | supercontig | sc0007087:272..1177 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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