TCONS_00045155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045155
Unique NameTCONS_00045155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045155 ID=TCONS_00045155|Name=TCONS_00045155|organism=Clytia hemisphaerica|type=transcript|length=766bp
TTATAAGCacaatgcttataaagaaaaaacatttaatgcCAATTAATTTC
TAATCTCATTAACAATCTTAAAATGTTATTCATACATTCCGGGTAATCtt
atagcgagtttatgtattcaaaataaatcgaaggagacggtataaagcaa
agttgacaaaACTCTAAAATCAACGTCCACTTTGCTCAACGACGGTAAAA
AGACTataataccgtcgtctgtttaggtgaaaaaaggcgatatagagccg
taaatcaactatcgactttgttttgcgttGACTTCATTTACCGTCGCTCA
CGATATCCACCGATacataaaacctttaatattgTTCACCAATATATATT
AAGTATTCAAAAGTAGTAAATAACCCTCGAACGCGTTATTAGAGGACTTT
AACCAACAAAGTTTCTGTCTAAATAAGGGTTATGAGTGGCCTGGAATAGT
AGATAAACTAAATAAactaaataaacataaataaACTTAAGAAAACCCTC
CAATAACTTACGTAAGATAGTAAATCTTCTCTCTAGCGTATTAGTCCCAG
TAAATGTTTGGGAAGCAAAACATCGAACAAAACGGGCCTCTTTCggcaaa
tttgaaaatgatgctGTGATGTTTGATGGCATACCAGGTTCTAAAATAGA
TGAAGAAAATATGAATTTCAATGACATACAACTTCGAGGAGCGATGACCG
AGTGGTTAAAGCGTCTTCACTACAAGCAAGAGGTTCGCGGTTCGAAACCC
Cgttccttccaatgtt
Run BLAST on NCBI

transcript from alignment at sc0007096:69..834

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045155 ID=TCONS_00045155|Name=TCONS_00045155|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at sc0007096:69..834 (Clytia hemisphaerica)
aacattggaaggaacGGGGTTTCGAACCGCGAACCTCTTGCTTGTAGTGA
AGACGCTTTAACCACTCGGTCATCGCTCCTCGAAGTTGTATGTCATTGAA
ATTCATATTTTCTTCATCTATTTTAGAACCTGGTATGCCATCAAACATCA
CagcatcattttcaaatttgccGAAAGAGGCCCGTTTTGTTCGATGTTTT
GCTTCCCAAACATTTACTGGGACTAATACGCTAGAGAGAAGATTTACTAT
CTTACGTAAGTTATTGGAGGGTTTTCTTAAGTttatttatgtttatttag
tTTATTTAGTTTATCTACTATTCCAGGCCACTCATAACCCTTATTTAGAC
AGAAACTTTGTTGGTTAAAGTCCTCTAATAACGCGTTCGAGGGTTATTTA
CTACTTTTGAATACTTAATATATATTGGTGAAcaatattaaaggttttat
gtATCGGTGGATATCGTGAGCGACGGTAAATGAAGTCaacgcaaaacaaa
gtcgatagttgatttacggctctatatcgccttttttcacctaaacagac
gacggtattatAGTCTTTTTACCGTCGTTGAGCAAAGTGGACGTTGATTT
TAGAGTtttgtcaactttgctttataccgtctccttcgatttattttgaa
tacataaactcgctataaGATTACCCGGAATGTATGAATAACATTTTAAG
ATTGTTAATGAGATTAGAAATTAATTGgcattaaatgttttttctttata
agcattgtGCTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028738XLOC_028738Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045155-exon-sc0007096-1491911889:69..834TCONS_00045155-exon-sc0007096-1491911889:69..834Clytia hemisphaericaexon
TCONS_00045155-exon-sc0007096-1510915933:69..834TCONS_00045155-exon-sc0007096-1510915933:69..834Clytia hemisphaericaexon
TCONS_00045155-exon-sc0007096-1575043694:69..834TCONS_00045155-exon-sc0007096-1575043694:69..834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007096supercontigsc0007096:69..834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127389	0.062112	0.216354	0.282225	0.601268	0.543005	0.491335	0.8433	1.07348	1.86155	4.51716	0.551461	18.5542	10.0303	5.85917	18.1259	3.53832	3.62666	0	0.566816	0	0	0.146061	0	0	0	1.83409	0.745672	1.06044	1.00839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top