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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045163 ID=TCONS_00045163|Name=TCONS_00045163|organism=Clytia hemisphaerica|type=transcript|length=1122bp
CTTTCGGTTTACTTTAActctattagccccaagctttttaaATTTGTCTA
GCCCCAGAAGGGGATAATCTACCACCCTCAAAAGTTTCAAatcgtttcaa
aaattttccatccgAGATATACACAAGGAGCTAAGGGGGCTAATAGGCTT
TAAATATAGAAAATTGTATAGAAACATAAATGCAGTAGAATTATCTGTAA
TAAAATGAGTTTTTTAGCATTAATAGCATAAACAATCATCACGCNGTAGA
ATTATCTGTAATAAAATGAGTTTTTTAGCATTAATAGCATAAACAATCAT
CACGCAatacaaatatttttgtgtgctttataaatgaaaattggtatcaa
cattttcaacttttctttaTTTCCTCCACGTTCTTGAATTTAGTTGAACA
TTTACATTATTGTTGAGCGTGCATGTAGTgaataatcaaacaaaatgttg
caaaactaAAGCTTAAATAAATGCTAAAATAACATACGaacaaatatttc
ttaaataattttcaatatattaCAGTGAAAATTTAATGTTTCGGACTAAA
TTTTTAGAAATAGAGTACTCAGTCCATTTGCCTACGGGCCtagttgattt
ttttaaacttcttcACTTGTGTTTAGTTGCTGGCGAAGAAAGCAGGCATT
TTCTTGTATTTGAAATCTTCCTTGAATTCACACGCaaattcatcatcatc
aacatCTTTACCTTCTTCCACGCTCAATTTCTTGGCTGTTTTGGCGCCCG
ATGACTTGCCCGCGCGTTTGTTGGCGCGCTTTCTCTTCAAGTGTGGTGAA
ACATTACGGAGATAAGCCAAAAGGATGGCGATGAATCCGAGATAGAATCC
GATTCCGATAAACATTACAACCAATGGGATATATTTGAAAAACATATCTG
AGAAGATGCTGATCGGGATCATAGCAAAATGGTAGATACAGTATGGGAGG
ATGAGCAATTTTCGTCGGGGATAAGAAAGGGCTGAGTCGGAGACTCCAAA
GAGAGTTGCAACTGATAGGATAATCGAGATCAGGTTTGCGACGATTGCAA
CGATGTTCATGATGTAGGCTTTATCGTGGTGTCGCTCACATGCGATCTGG
GCATCGGTAGCATTTGGCAGAC Run BLAST on NCBI protein sequence of TCONS_00045163-protein >TCONS_00045163-protein ID=TCONS_00045163-protein|Name=TCONS_00045163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
LPNATDAQIACERHHDKAYIMNIVAIVANLISIILSVATLFGVSDSALSY
PRRKLLILPYCIYHFAMIPISIFSDMFFKYIPLVVMFIGIGFYLGFIAIL
LAYLRNVSPHLKRKRANKRAGKSSGAKTAKKLSVEEGKDVDDDEFACEFK
EDFKYKKMPAFFASN Run BLAST on NCBI transcript from alignment at sc0007114:1..1122 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045163 ID=TCONS_00045163|Name=TCONS_00045163|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at sc0007114:1..1122 (Clytia hemisphaerica)
GTCTGCCAAATGCTACCGATGCCCAGATCGCATGTGAGCGACACCACGAT
AAAGCCTACATCATGAACATCGTTGCAATCGTCGCAAACCTGATCTCGAT
TATCCTATCAGTTGCAACTCTCTTTGGAGTCTCCGACTCAGCCCTTTCTT
ATCCCCGACGAAAATTGCTCATCCTCCCATACTGTATCTACCATTTTGCT
ATGATCCCGATCAGCATCTTCTCAGATATGTTTTTCAAATATATCCCATT
GGTTGTAATGTTTATCGGAATCGGATTCTATCTCGGATTCATCGCCATCC
TTTTGGCTTATCTCCGTAATGTTTCACCACACTTGAAGAGAAAGCGCGCC
AACAAACGCGCGGGCAAGTCATCGGGCGCCAAAACAGCCAAGAAATTGAG
CGTGGAAGAAGGTAAAGatgttgatgatgatgaatttGCGTGTGAATTCA
AGGAAGATTTCAAATACAAGAAAATGCCTGCTTTCTTCGCCAGCAACTAA
ACACAAGTgaagaagtttaaaaaaatcaactaGGCCCGTAGGCAAATGGA
CTGAGTACTCTATTTCTAAAAATTTAGTCCGAAACATTAAATTTTCACTG
taatatattgaaaattatttaagaaatatttgttCGTATGTTATTTTAGC
ATTTATTTAAGCTTtagttttgcaacattttgtttgattattcACTACAT
GCACGCTCAACAATAATGTAAATGTTCAACTAAATTCAAGAACGTGGAGG
AAAtaaagaaaagttgaaaatgttgataccaattttcatttataaagcac
acaaaaatatttgtatTGCGTGATGATTGTTTATGCTATTAATGCTAAAA
AACTCATTTTATTACAGATAATTCTACNGCGTGATGATTGTTTATGCTAT
TAATGCTAAAAAACTCATTTTATTACAGATAATTCTACTGCATTTATGTT
TCTATACAATTTTCTATATTTAAAGCCTATTAGCCCCCTTAGCTCCTTGT
GTATATCTcggatggaaaatttttgaaacgatTTGAAACTTTTGAGGGTG
GTAGATTATCCCCTTCTGGGGCTAGACAAATttaaaaagcttggggctaa
tagagTTAAAGTAAACCGAAAG Coding sequence (CDS) from alignment at sc0007114:1..1122 >TCONS_00045163 ID=TCONS_00045163|Name=TCONS_00045163|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0007114:1..1122 (Clytia hemisphaerica)
CTGCCAAATGCTACCGATGCCCAGATCGCATGTGAGCGACACCACGATAA
AGCCTACATCATGAACATCGTTGCAATCGTCGCAAACCTGATCTCGATTA
TCCTATCAGTTGCAACTCTCTTTGGAGTCTCCGACTCAGCCCTTTCTTAT
CCCCGACGAAAATTGCTCATCCTCCCATACTGTATCTACCATTTTGCTAT
GATCCCGATCAGCATCTTCTCAGATATGTTTTTCAAATATATCCCATTGG
TTGTAATGTTTATCGGAATCGGATTCTATCTCGGATTCATCGCCATCCTT
TTGGCTTATCTCCGTAATGTTTCACCACACTTGAAGAGAAAGCGCGCCAA
CAAACGCGCGGGCAAGTCATCGGGCGCCAAAACAGCCAAGAAATTGAGCG
TGGAAGAAGGTAAAGatgttgatgatgatgaatttGCGTGTGAATTCAAG
GAAGATTTCAAATACAAGAAAATGCCTGCTTTCTTCGCCAGCAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045163-exon-sc0007114-1491911889:1..1122 | TCONS_00045163-exon-sc0007114-1491911889:1..1122 | Clytia hemisphaerica | exon |
| TCONS_00045163-exon-sc0007114-1510915933:1..1122 | TCONS_00045163-exon-sc0007114-1510915933:1..1122 | Clytia hemisphaerica | exon |
| TCONS_00045163-exon-sc0007114-1575043694:1..1122 | TCONS_00045163-exon-sc0007114-1575043694:1..1122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007114 | supercontig | sc0007114:1..1122 . |
Blast
The following BLAST results are available for this feature:
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