TCONS_00045192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045192
Unique NameTCONS_00045192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045192 ID=TCONS_00045192|Name=TCONS_00045192|organism=Clytia hemisphaerica|type=transcript|length=546bp
CTTTTCAAGGCAAGCCGTTCTGACTTCATTCAGCCATGAGCATttattga
agaaaaatttgCCCTCCTCTCTGTTCACATACCTTGGTGTCAAACCTTGA
CAAGGACAATTCAACCAGCTTCCCTTTCTGTCTTTTGTTTTTCATATGTG
TACAAAATCACGTTATTGCGTTAATATAAATACATCTTTTGTTGTCACTT
TTTTGTCGTTTTAATTTGTGAtcgttgttttcattttattatgaCTAATT
TTCCCATGAAACAATTACCATTGGTTTTGCAATAAAGTAAATACAGTCTC
TCTTTGTACCAGCCATCATATCCGTTGGAAAACTAATGGAAACGGCGAGA
CTCGAAATCACGTACTTTTCATCTAAGTGGAATACGAGAACTTGACAATT
GAGAAAGAATTTTTGTCTGCTGGCTGAACAGAGACAGTGAATTGGAAGAA
CTTCATATCCACGTTTGGTGATGCGTTTGGATTACACTAGACCATAGATA
TTAATTATGAAACCATCATGATGGTCTGAAGAGAATTTCATAAGAG
Run BLAST on NCBI

transcript from alignment at sc0007168:571..1116

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045192 ID=TCONS_00045192|Name=TCONS_00045192|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at sc0007168:571..1116 (Clytia hemisphaerica)
CTCTTATGAAATTCTCTTCAGACCATCATGATGGTTTCATAATTAATATC
TATGGTCTAGTGTAATCCAAACGCATCACCAAACGTGGATATGAAGTTCT
TCCAATTCACTGTCTCTGTTCAGCCAGCAGACAAAAATTCTTTCTCAATT
GTCAAGTTCTCGTATTCCACTTAGATGAAAAGTACGTGATTTCGAGTCTC
GCCGTTTCCATTAGTTTTCCAACGGATATGATGGCTGGTACAAAGAGAGA
CTGTATTTACTTTATTGCAAAACCAATGGTAATTGTTTCATGGGAAAATT
AGtcataataaaatgaaaacaacgaTCACAAATTAAAACGACAAAAAAGT
GACAACAAAAGATGTATTTATATTAACGCAATAACGTGATTTTGTACACA
TATGAAAAACAAAAGACAGAAAGGGAAGCTGGTTGAATTGTCCTTGTCAA
GGTTTGACACCAAGGTATGTGAACAGAGAGGAGGGcaaatttttcttcaa
taaATGCTCATGGCTGAATGAAGTCAGAACGGCTTGCCTTGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028775XLOC_028775Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045192-exon-sc0007168-1491911889:571..1116TCONS_00045192-exon-sc0007168-1491911889:571..1116Clytia hemisphaericaexon
TCONS_00045192-exon-sc0007168-1510915933:571..1116TCONS_00045192-exon-sc0007168-1510915933:571..1116Clytia hemisphaericaexon
TCONS_00045192-exon-sc0007168-1575043694:571..1116TCONS_00045192-exon-sc0007168-1575043694:571..1116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007168supercontigsc0007168:571..1116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04564	1.33149	1.48842	1.31638	0.141969	0.112186	0.541392	0.68242	0.0931939	0.549429	0	0.280451	0.21234	0.593898	0.119557	0	0.33804	0.248557	0.11191	0.117106	0.225679	0.155549	0.25559	0.110505	1.01726	1.12079	0	0	0.353617	0.122071
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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