TCONS_00045209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045209
Unique NameTCONS_00045209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1090

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045209 ID=TCONS_00045209|Name=TCONS_00045209|organism=Clytia hemisphaerica|type=transcript|length=1090bp
ACTGAGATAGTTACGAAAGGTCGCATACCATATCCAGGTATGTCAAATGC
AGAGACAATTGCCCAAGTTGAAAGGGGTTACAGGATGCCCATGCCACCAA
ATTGCCCCGAACCACTTTATCAAATTATGTTACAATGTTGGAATAAGGAA
GCTGAAAACAGGCCAACATTCGAATACTTACAAGCTACAATGGAGGACTA
TTTCGTATCAGCAGAGCCTAGTTACCGTGATTTAAATCAATAAATACTAT
TGAATGTTTAGAAAGATAtgatgatgaaaaatgaaatgtttaaGGAGCAA
GGCTTGCTTACtaaatgaaatattttggaCGATTAAACGAAGATTAATGG
GGTATTTTAATAATGCCTAGATTTAAATTTCATTACTATTTTTCTATTTG
tgattttctatattttttattgctggTTATTTTTATTGGGAAGAAGGTCA
ATAGAGCTTTGATTGATATGTCATTTGTTACTCAAAATGCAACCTGAATT
AAAATAAAAGAGCTACAAGGATTCCAcgataagaatattttagtctTGGC
GGTGTAGATAACGGTTTGAAAAGATTGAGATTTGCTTTATAATACagcgg
aaaaaaaaattggaaataccTTCTTTTAATTCTtatcctttcaatttttt
tcatttttagtattAATAAACTAATAATTATAATTGCATAGGAATCCTAA
AAATCTGTAAATTTTACCTTCTATCATTGATATGTGTTTGTATAATAAAA
TACTCTAATCTAGCAtcttgtattttattttctaagcaattttgataatt
ttgaactCTGTAACACATACCTTTAgaagttttttatttgtttgataTAA
ATTAGAGGAGTTTTATCAAGAAGGCTGTTCTTTGTAGGGGattttttaaa
acgttttgtcatcatgctcaagctTCCTCATTTCTTCTCTCAGTGTTTTt
gccataattttcatttcatttgagTGAACccattcattttcaaagttgtt
tttattctattgaaCTATTCAAGGAAATTCCAGCTTCTACTGAGTTGCTT
TTTTGTACAGACATGATgattttatgaaattgttctttta
Run BLAST on NCBI

transcript from alignment at sc0007194:5..1094

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045209 ID=TCONS_00045209|Name=TCONS_00045209|organism=Clytia hemisphaerica|type=transcript|length=1090bp|location=Sequence derived from alignment at sc0007194:5..1094 (Clytia hemisphaerica)
taaaagaacaatttcataaaatcATCATGTCTGTACAAAAAAGCAACTCA
GTAGAAGCTGGAATTTCCTTGAATAGttcaatagaataaaaacaactttg
aaaatgaatggGTTCActcaaatgaaatgaaaattatggcaAAAACACTG
AGAGAAGAAATGAGGAagcttgagcatgatgacaaaacgttttaaaaaat
CCCCTACAAAGAACAGCCTTCTTGATAAAACTCCTCTAATTTAtatcaaa
caaataaaaaacttcTAAAGGTATGTGTTACAGagttcaaaattatcaaa
attgcttagaaaataaaatacaagaTGCTAGATTAGAGTATTTTATTATA
CAAACACATATCAATGATAGAAGGTAAAATTTACAGATTTTTAGGATTCC
TATGCAATTATAATTATTAGTTTATTaatactaaaaatgaaaaaaattga
aaggataAGAATTAAAAGAAggtatttccaatttttttttccgctGTATT
ATAAAGCAAATCTCAATCTTTTCAAACCGTTATCTACACCGCCAagacta
aaatattcttatcgTGGAATCCTTGTAGCTCTTTTATTTTAATTCAGGTT
GCATTTTGAGTAACAAATGACATATCAATCAAAGCTCTATTGACCTTCTT
CCCAATAAAAATAAccagcaataaaaaatatagaaaatcaCAAATAGAAA
AATAGTAATGAAATTTAAATCTAGGCATTATTAAAATACCCCATTAATCT
TCGTTTAATCGtccaaaatatttcatttaGTAAGCAAGCCTTGCTCCtta
aacatttcatttttcatcatcaTATCTTTCTAAACATTCAATAGTATTTA
TTGATTTAAATCACGGTAACTAGGCTCTGCTGATACGAAATAGTCCTCCA
TTGTAGCTTGTAAGTATTCGAATGTTGGCCTGTTTTCAGCTTCCTTATTC
CAACATTGTAACATAATTTGATAAAGTGGTTCGGGGCAATTTGGTGGCAT
GGGCATCCTGTAACCCCTTTCAACTTGGGCAATTGTCTCTGCATTTGACA
TACCTGGATATGGTATGCGACCTTTCGTAACTATCTCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028792XLOC_028792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045209-exon-sc0007194-1491911889:5..1094TCONS_00045209-exon-sc0007194-1491911889:5..1094Clytia hemisphaericaexon
TCONS_00045209-exon-sc0007194-1510915933:5..1094TCONS_00045209-exon-sc0007194-1510915933:5..1094Clytia hemisphaericaexon
TCONS_00045209-exon-sc0007194-1575043694:5..1094TCONS_00045209-exon-sc0007194-1575043694:5..1094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007194supercontigsc0007194:5..1094 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.3709	20.8745	62.2268	75.7009	164.484	121.522	66.9857	67.7984	44.255	48.8597	34.4029	25.0994	30.0601	27.9372	30.2555	32.7536	44.8684	40.5459	31.1176	33.6878	45.2399	51.1294	43.4735	48.9682	33.1377	35.2484	52.8887	45.1477	56.9492	58.4881
Blast
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BLAST of TCONS_00045209 vs. Swiss-Prot (Human)
Match: SRC (Proto-oncogene tyrosine-protein kinase Src OS=Homo sapiens GN=SRC PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.524e-29
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 TEIVTKGRIPYPGMSNAETIAQVERGYRMPMPPNCPEPLYQIMLQCWNKEAENRPTFEYLQATMEDYFVSAEPSYR 228
            TE+ TKGR+PYPGM N E + QVERGYRMP PP CPE L+ +M QCW KE E RPTFEYLQA +EDYF S EP Y+
Sbjct:  456 TELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQ 531
The following BLAST results are available for this feature:
BLAST of TCONS_00045209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRC1.524e-2968.42Proto-oncogene tyrosine-protein kinase Src OS=Homo... [more]
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