TCONS_00045236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045236
Unique NameTCONS_00045236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045236 ID=TCONS_00045236|Name=TCONS_00045236|organism=Clytia hemisphaerica|type=transcript|length=474bp
AGAAGAGATAAATTGTGGAGAAGATAAAAACATGAGAGGTGACTATCAAA
ATGGTCTTAACGATACAATTCTCGTCGATTTCCTCTCTGAGCACAAACAT
CAACAATAAAGAGGGGTAGCCGATCAACGATAATCCGATCTGGTTGAGAG
AGCAGAAAAAGATCAGTCTTGTGGATCGGTTTCTTagctggtttgttttg
atgatgACGTAACAGGTCATGAGATTTAGAGAGAGGCTTACGGCACCAAA
GCTAGGGAATAAGATGTAGAGGTAAAGATGGTGAGACTCTGGTATGAATG
CATGGAAACGATCAACTGTTCCATAGCAACGAGTAATTGTGGTCATAATG
GTTCTGTTTGTGTTATTCATAATCATCTTTAAATGTCAAACctgtaaaat
ataaatttatataACGTTGTCATTGATTGAAACTACGTTGACACGAAATT
TGGAAAACCTGATTTAATAATTTC
Run BLAST on NCBI

protein sequence of TCONS_00045236-protein

>TCONS_00045236-protein ID=TCONS_00045236-protein|Name=TCONS_00045236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MIMNNTNRTIMTTITRCYGTVDRFHAFIPESHHLYLYILFPSFGAVSLSL
NLMTCYVIIKTNQLRNRSTRLIFFCSLNQIGLSLIGYPSLLLMFVLREEI
DENCIVKTILIVTSHVFIFSTIYLF
Run BLAST on NCBI

transcript from alignment at sc0007267:203..676

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045236 ID=TCONS_00045236|Name=TCONS_00045236|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at sc0007267:203..676 (Clytia hemisphaerica)
GAAATTATTAAATCAGGTTTTCCAAATTTCGTGTCAACGTAGTTTCAATC
AATGACAACGTtatataaatttatattttacagGTTTGACATTTAAAGAT
GATTATGAATAACACAAACAGAACCATTATGACCACAATTACTCGTTGCT
ATGGAACAGTTGATCGTTTCCATGCATTCATACCAGAGTCTCACCATCTT
TACCTCTACATCTTATTCCCTAGCTTTGGTGCCGTAAGCCTCTCTCTAAA
TCTCATGACCTGTTACGTcatcatcaaaacaaaccagctAAGAAACCGAT
CCACAAGACTGATCTTTTTCTGCTCTCTCAACCAGATCGGATTATCGTTG
ATCGGCTACCCCTCTTTATTGTTGATGTTTGTGCTCAGAGAGGAAATCGA
CGAGAATTGTATCGTTAAGACCATTTTGATAGTCACCTCTCATGTTTTTA
TCTTCTCCACAATTTATCTCTTCT

Coding sequence (CDS) from alignment at sc0007267:203..676

>TCONS_00045236 ID=TCONS_00045236|Name=TCONS_00045236|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0007267:203..676 (Clytia hemisphaerica)
ATGATTATGAATAACACAAACAGAACCATTATGACCACAATTACTCGTTG
CTATGGAACAGTTGATCGTTTCCATGCATTCATACCAGAGTCTCACCATC
TTTACCTCTACATCTTATTCCCTAGCTTTGGTGCCGTAAGCCTCTCTCTA
AATCTCATGACCTGTTACGTcatcatcaaaacaaaccagctAAGAAACCG
ATCCACAAGACTGATCTTTTTCTGCTCTCTCAACCAGATCGGATTATCGT
TGATCGGCTACCCCTCTTTATTGTTGATGTTTGTGCTCAGAGAGGAAATC
GACGAGAATTGTATCGTTAAGACCATTTTGATAGTCACCTCTCATGTTTT
TATCTTCTCCACAATTTATCTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028818XLOC_028818Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045236-proteinTCONS_00045236-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045236-exon-sc0007267-1491911889:203..676TCONS_00045236-exon-sc0007267-1491911889:203..676Clytia hemisphaericaexon
TCONS_00045236-exon-sc0007267-1510915933:203..676TCONS_00045236-exon-sc0007267-1510915933:203..676Clytia hemisphaericaexon
TCONS_00045236-exon-sc0007267-1575043694:203..676TCONS_00045236-exon-sc0007267-1575043694:203..676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007267supercontigsc0007267:203..676 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.267757	0.783314	1.21267	0.593204	0	0.285334	0.172122	0.322276	0.33845	0.139742	0	0.713297	0.267115	1.29454	0	0.244745	0	0	0	0	0.258882	0	0.153502	0	0.718696	0.128284	0.367147	0	0.297189	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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