TCONS_00045256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045256
Unique NameTCONS_00045256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045256 ID=TCONS_00045256|Name=TCONS_00045256|organism=Clytia hemisphaerica|type=transcript|length=880bp
GTCGGTTCCCcagttaaaaatgttttaaaagttccccctttattttaaaa
ctaaaaagctGGCATTCCTTATTTTCATATGCTGATCTCtcaaaattatt
atcaataaaGTTAAGAATATGTAACCTCTATAAAAATACCAGGGCGAACA
TCCAGGTTGAAAACAACAGGCCTATTGTTTAAAACGTTAGCAAAATCAGA
ATAAagctcaccctcaaccaaagcACACTATTGtacaaaaaacgtgtata
ttatTTACCATGAAAATCGAATATATACTATAGCAGCTATAAAACTAAGA
AAATGAAATAACACAAATGGAAAAATTATCCTAGCTTCGTTTAATTCCGT
CATACCATGTTGAATTCCATCATAGCAAacttctggtctgtaaaatagtt
aaaaacaaaccttttgcaATAGCTTTCTCAGATATTATGCTTTTCAAAAA
AcagtaaaatatgaaaaagatcAGAAGGTTGCTATGATGGAATTATACGA
AATTACcttaaaagaactaattttgatGGGAGGAAAGTTTGGCAGATTTG
GTTGGTGGTCGGGTACTGGCTAATGGTGGATTTGCTGGAAATCTTTTTCA
ACATCCGCCAAATTTAGCTTTATTGCtgacccgccaaattaaatttcctc
tgaaaaacttttttcagtaatccgcaaaatttaattcctgctaaaattag
ttcctttACTAAGTTATGGTATCAAGTTAAAGGTCATCATATCTGCTTTT
TTAAGTTCAGCTCAACTGAGCGAGcgtttctttccttttttgttctgaca
gttagtcacactaggaaatctagctttcagaaaaaacaacatcagtcatc
tacaggatacatttcaacaacaaggatgag
Run BLAST on NCBI

transcript from alignment at sc0007323:5..884

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045256 ID=TCONS_00045256|Name=TCONS_00045256|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at sc0007323:5..884 (Clytia hemisphaerica)
ctcatccttgttgttgaaatgtatcctgtagatgactgatgttgtttttt
ctgaaagctagatttcctagtgtgactaactgtcagaacaaaaaaggaaa
gaaacgCTCGCTCAGTTGAGCTGAACTTAAAAAAGCAGATATGATGACCT
TTAACTTGATACCATAACTTAGTaaaggaactaattttagcaggaattaa
attttgcggattactgaaaaaagtttttcagaggaaatttaatttggcgg
gtcaGCAATAAAGCTAAATTTGGCGGATGTTGAAAAAGATTTCCAGCAAA
TCCACCATTAGCCAGTACCCGACCACCAACCAAATCTGCCAAACTTTCCT
CCCatcaaaattagttcttttaagGTAATTTCGTATAATTCCATCATAGC
AACCTTCTgatctttttcatattttactgTTTTTTGAAAAGCATAATATC
TGAGAAAGCTATtgcaaaaggtttgtttttaactattttacagaccagaa
gtTTGCTATGATGGAATTCAACATGGTATGACGGAATTAAACGAAGCTAG
GATAATTTTTCCATTTGTGTTATTTCATTTTCTTAGTTTTATAGCTGCTA
TAGTATATATTCGATTTTCATGGTAAataatatacacgttttttgtaCAA
TAGTGTgctttggttgagggtgagctTTATTCTGATTTTGCTAACGTTTT
AAACAATAGGCCTGTTGTTTTCAACCTGGATGTTCGCCCTGGTATTTTTA
TAGAGGTTACATATTCTTAACtttattgataataattttgaGAGATCAGC
ATATGAAAATAAGGAATGCCagctttttagttttaaaataaagggggaac
ttttaaaacatttttaactgGGGAACCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028838XLOC_028838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045256-exon-sc0007323-1491911889:5..884TCONS_00045256-exon-sc0007323-1491911889:5..884Clytia hemisphaericaexon
TCONS_00045256-exon-sc0007323-1510915933:5..884TCONS_00045256-exon-sc0007323-1510915933:5..884Clytia hemisphaericaexon
TCONS_00045256-exon-sc0007323-1575043694:5..884TCONS_00045256-exon-sc0007323-1575043694:5..884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007323supercontigsc0007323:5..884 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.436287	0.599028	0.824284	1.46822	0.890477	0.646825	0.87549	0.609657	0.427137	0.849356	0.398712	1.24294	0.852286	0.625472	0.299614	0.694536	0.605261	0.583939	1.05039	0.559452	0.648014	0.439134	0.164017	0.394846	0.43256	0.448617	0.507924	0.258272	0.603582	0.860166
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top