TCONS_00045262 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045262
Unique NameTCONS_00045262
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045262 ID=TCONS_00045262|Name=TCONS_00045262|organism=Clytia hemisphaerica|type=transcript|length=841bp
tagggaaatactgaaaatccgtaaaattccagccaaaaaaagccaaaatc
aggaaaaaaacatttttcgtaggctcaagtaatgcttgccagatgcttaa
tttttccccatatctgagcctagatatgcttataagtgcaatgcttataa
aaaaaacatgtatgtgatggaagaacttttaacactaGGTAATTCTTGAT
GCTCGGCGGGCTAATATTATAGATAATTCTTAAGGATTTTGTCTCTTGGA
TTTTCAGGAAATCTTTGAGAAGAATCGTCATTTAACACCAACTGAAATCC
GGGAAAAACTTGTTTTGATGGAAAAAGATAAACAGAACGAACGCTGTGAC
TTTGATCGAACAAATCTTAAAAATCCATGTCATTATGAAGAAGATAAAAC
ACCCACAGAAACAGATTATATTCGTTATGTTTTAGACTATTGTCAACATT
TTGAGGATAGAGGTTGTGTGATGAATAAACCACAATTGATGACAAAAATG
TCACTAAATGATCTTGAGGAAATGAAACTGAAGAATAAAGAGTTATGAGC
ACCTGTGAAAGAGGCCCCACAGCCGACCATCAATTCACGCaaaaccgaaa
atgcccattcacgcattcacgcaaaccgctgggggcgtGAAAGGGATGGC
TCAAAATGTGGAAAGCTTTATTGTATATTTGGACattaatatttttgaat
gcGATAAATGAAAATACTGTAAATCAACAGATTGCTCATTGAGCTGTTCA
ATTTTAACCAGAACcatataatatatgttacaataaaattataccgggtg
cgccacaaaaaagtttctctctttaaaacttattttctcga
Run BLAST on NCBI

transcript from alignment at sc0007341:154..994

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045262 ID=TCONS_00045262|Name=TCONS_00045262|organism=Clytia hemisphaerica|type=transcript|length=841bp|location=Sequence derived from alignment at sc0007341:154..994 (Clytia hemisphaerica)
tcgagaaaataagttttaaagagagaaacttttttgtggcgcacccggta
taattttattgtaacatatattatatgGTTCTGGTTAAAATTGAACAGCT
CAATGAGCAATCTGTTGATTTACAGTATTTTCATTTATCgcattcaaaaa
tattaatGTCCAAATATACAATAAAGCTTTCCACATTTTGAGCCATCCCT
TTCacgcccccagcggtttgcgtgaatgcgtgaatgggcattttcggttt
tGCGTGAATTGATGGTCGGCTGTGGGGCCTCTTTCACAGGTGCTCATAAC
TCTTTATTCTTCAGTTTCATTTCCTCAAGATCATTTAGTGACATTTTTGT
CATCAATTGTGGTTTATTCATCACACAACCTCTATCCTCAAAATGTTGAC
AATAGTCTAAAACATAACGAATATAATCTGTTTCTGTGGGTGTTTTATCT
TCTTCATAATGACATGGATTTTTAAGATTTGTTCGATCAAAGTCACAGCG
TTCGTTCTGTTTATCTTTTTCCATCAAAACAAGTTTTTCCCGGATTTCAG
TTGGTGTTAAATGACGATTCTTCTCAAAGATTTCCTGAAAATCCAAGAGA
CAAAATCCTTAAGAATTATCTATAATATTAGCCCGCCGAGCATCAAGAAT
TACCtagtgttaaaagttcttccatcacatacatgttttttttataagca
ttgcacttataagcatatctaggctcagatatggggaaaaattaagcatc
tggcaagcattacttgagcctacgaaaaatgtttttttcctgattttggc
tttttttggctggaattttacggattttcagtatttcccta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028844XLOC_028844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045262-exon-sc0007341-1491911889:154..994TCONS_00045262-exon-sc0007341-1491911889:154..994Clytia hemisphaericaexon
TCONS_00045262-exon-sc0007341-1510915933:154..994TCONS_00045262-exon-sc0007341-1510915933:154..994Clytia hemisphaericaexon
TCONS_00045262-exon-sc0007341-1575043694:154..994TCONS_00045262-exon-sc0007341-1575043694:154..994Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007341supercontigsc0007341:154..994 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.30552	4.96734	24.4345	27.4375	33.4918	23.4487	21.9126	23.3519	13.9024	16.907	15.4642	13.9441	6.46461	5.46475	9.48498	9.02195	7.56279	8.66235	7.75677	8.55149	8.93147	8.88695	8.62528	10.3708	5.64137	7.51448	10.5024	7.42349	8.00952	6.83095
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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