TCONS_00045264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045264
Unique NameTCONS_00045264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045264 ID=TCONS_00045264|Name=TCONS_00045264|organism=Clytia hemisphaerica|type=transcript|length=368bp
TCCATCAGTTTTATTGTTCACTCGAAAAAGACCACCAATCAAATACCGAG
GGGAAATAACGAAGTCCAATATTGTTTCATGGCTCATGGAAGAAACAGGA
GTGCTTTTAGAGAATGAGACGTCCCTGGCACAAATTCAACATCAAGCTAG
ACGATTCATGAAGATTTATTTAGACCAATCAGAAGACGACAAACAAACTG
AAGTTGAGAAGATGATCACAAAAACTGAAGATATGATTGGAAATATTCGA
ACGGACTCTGATAAAGCCCTGTGTAAAGTCTACATTCAGGTTATGAAAAA
AGTCTTAGCAAAGGGTCGGGACTATATTTCAAATGAACCTTTGAGACTGC
GGAATTTGATCAGAAGGG
Run BLAST on NCBI

protein sequence of TCONS_00045264-protein

>TCONS_00045264-protein ID=TCONS_00045264-protein|Name=TCONS_00045264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
PSVLLFTRKRPPIKYRGEITKSNIVSWLMEETGVLLENETSLAQIQHQAR
RFMKIYLDQSEDDKQTEVEKMITKTEDMIGNIRTDSDKALCKVYIQVMKK
VLAKGRDYISNEPLRLRNLIRR
Run BLAST on NCBI

transcript from alignment at sc0007345:1..992-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045264 ID=TCONS_00045264|Name=TCONS_00045264|organism=Clytia hemisphaerica|type=transcript|length=992bp|location=Sequence derived from alignment at sc0007345:1..992- (Clytia hemisphaerica)
TCCATCAGTTTTATTGTTCACTCGAAAAAGACCACCAATCAAATACCGAG
GGGAAATAACGAAGTCCAATATTGTTTCATGGCTCATGGAAGAAACAGGA
GTGCTTTTAGGTTTGTTGAGACTACTTCTGAGTTGATTTGGTTTTATAAA
AAGACTGGCATTCAACTAAACCAAAACCTAACACCATTATTGAAAGAATT
TTCTATAGAGTCATTAATCACAAAGAAATACTTCATCATATGTCTATACT
TAAGTTTTAGCAGAATTATGATTATAAAACGTCGTTAGAGTCAAGGGAAT
GGAATTTTAAAACCTTCAAGATTTGTGACGGATTTTTCGAAAAGTATTCG
TCGTCCTTTTTGTAAATGATTCTCATAGATTTATACTTTTGCCGTCTCAA
GGGTCTGAAAAATGTTTGATTAACGGGCCTCGAAATCGGACTGTGTGGNT
TTCGAAAAGTATTCGTCGTCCTTTTTGTAAATGATTCTCATAGATTTATA
CTTTTGCCGTCTCAAGGGTCTGAAAAATGTTTGATTAACGGGCCTCGAAA
TCGGACTGTGTGGTCGTTGTAATTTTGTCTGATCATTCAAGAGGACAGAA
CCAAAATTAGTTTTTAAGAATGGCTTTTCAAAATGAAAAAATATATTTAC
TTCATTCATTCTCACCAGCCACAAAGCCTCTGCCATTCAAATTCGGGAAT
ATCTTGTAAAAAACGTATTGCTTTCTCTAATTAGAGAATGAGACGTCCCT
GGCACAAATTCAACATCAAGCTAGACGATTCATGAAGATTTATTTAGACC
AATCAGAAGACGACAAACAAACTGAAGTTGAGAAGATGATCACAAAAACT
GAAGATATGATTGGAAATATTCGAACGGACTCTGATAAAGCCCTGTGTAA
AGTCTACATTCAGGTTATGAAAAAAGTCTTAGCAAAGGGTCGGGACTATA
TTTCAAATGAACCTTTGAGACTGCGGAATTTGATCAGAAGGG

Coding sequence (CDS) from alignment at sc0007345:1..992-

>TCONS_00045264 ID=TCONS_00045264|Name=TCONS_00045264|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0007345:1..992- (Clytia hemisphaerica)
AGAATGAGACGTCCCTGGCACAAATTCAACATCAAGCTAGACGATTCATG
AAGATTTATTTAGACCAATCAGAAGACGACAAACAAACTGAAGTTGAGAA
GATGATCACAAAAACTGAAGATATGATTGGAAATATTCGAACGGACTCTG
ATAAAGCCCTGTGTAAAGTCTACATTCAGGTTATGAAAAAAGTCTTAGCA
AAGGGTCGGGACTATATTTCAAATGAACCTTTGAGACTGCGGAATTTGAT
CAGAAGGCCATCAGTTTTATTGTTCACTCGAAAAAGACCACCAATCAAAT
ACCGAGGGGAAATAACGAAGTCCAATATTGTTTCATGGCTCATGGAAGAA
ACAGGAGTGCTTTTAGAGAATGAGACGTCCCTGGCACAAATTCAACATCA
AGCTAGACGATTCATGAAGATTTATTTAGACCAATCAGAAGACGACAAAC
AAACTGAAGTTGAGAAGATGATCACAAAAACTGAAGATATGATTGGAAAT
ATTCGAACGGACTCTGATAAAGCCCTGTGTAAAGTCTACATTCAGGTTAT
GAAAAAAGTCTTAGCAAAGGGTCGGGACTATATTTCAAATGAACCTTTGA
GACTGCGGAATTTGATCAGAAGGCCATCAGTTTTATTGTTCACTCGAAAA
AGACCACCAATCAAATACCGAGGGGAAATAACGAAGTCCAATATTGTTTC
ATGGCTCATGGAAGAAACAGGAGTGCTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028846XLOC_028846Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045264-proteinTCONS_00045264-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045264-exon-sc0007345-1575043694:883..992TCONS_00045264-exon-sc0007345-1575043694:883..992Clytia hemisphaericaexon
TCONS_00045264-exon-sc0007345-1575043694:1..258TCONS_00045264-exon-sc0007345-1575043694:1..258Clytia hemisphaericaexon
TCONS_00045264-exon-sc0007345-1510915933:883..992TCONS_00045264-exon-sc0007345-1510915933:883..992Clytia hemisphaericaexon
TCONS_00045264-exon-sc0007345-1510915933:1..258TCONS_00045264-exon-sc0007345-1510915933:1..258Clytia hemisphaericaexon
TCONS_00045264-exon-sc0007345-1491911889:883..992TCONS_00045264-exon-sc0007345-1491911889:883..992Clytia hemisphaericaexon
TCONS_00045264-exon-sc0007345-1491911889:1..258TCONS_00045264-exon-sc0007345-1491911889:1..258Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007345supercontigsc0007345:1..992 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.287	21.0488	7.71428	3.9126	1.34735	1.06131	3.24545	4.21437	7.72317	3.40694	4.89852	12.8941	14.0991	21.2148	13.4897	17.0067	6.56766	12.2929	15.7284	12.3979	12.9606	9.78535	29.3857	21.9046	7.69966	5.50141	4.35795	11.1625	16.2407	19.0134
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011679ERp29_C
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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