TCONS_00045288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045288
Unique NameTCONS_00045288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045288 ID=TCONS_00045288|Name=TCONS_00045288|organism=Clytia hemisphaerica|type=transcript|length=610bp
aaaaatatacGATGATTTATCTTCAAACCTTCTTTTGCTTCTTATCAAAA
TGGTTGAgagtaaaatgaaaaaaagcacCTAAAACGACTAGAAAAAGAAA
GCTAGAACATCCAATGGCACCGATGAAATTAACANAAAAAAAACACCTAA
AACGACTAGAAAAAGAAAGCTAGAACATCCAATGGCACCgatgaaattaa
caaaacatCAAAGACGTGAACACTTATTTGACGATTGGATTAGACATTTG
AGAActatgaataaaaaatatatggatATTGATTTATCGTTACATAGTGC
AACTGAAgataaaacaaaacattttcttatGTTTTCTCAACCATCTATCG
TAAACCCAGAAACGAAAAACAAAGTAATGGCTCATTATACGATGTTACCA
AGTTTGATAAACGAGATCAAGAGGtttcaagaaattttatttaaattgaA
TAATGATTCAGAAGTAGAAGTAGAAGTAGAAGCAGAAGtagaaacagaag
aaaaagTTCCACACGATGAATTAACGAAAAGCATTGATGAGGTAACTCTC
AATGAATATCAGCATGAGATGATTCCAATATATGCAAGTCTGCTGCTTTC
ATGGTTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00045288-protein

>TCONS_00045288-protein ID=TCONS_00045288-protein|Name=TCONS_00045288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MAPMKLTKHQRREHLFDDWIRHLRTMNKKYMDIDLSLHSATEDKTKHFLM
FSQPSIVNPETKNKVMAHYTMLPSLINEIKRFQEILFKLNNDSEVEVEVE
AEVETEEKVPHDELTKSIDEVTLNEYQHEMIPIYASLLLSWFY
Run BLAST on NCBI

transcript from alignment at sc0007421:4..613

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045288 ID=TCONS_00045288|Name=TCONS_00045288|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at sc0007421:4..613 (Clytia hemisphaerica)
ATAAAACCATGAAAGCAGCAGACTTGCATATATTGGAATCATCTCATGCT
GATATTCATTGAGAGTTACCTCATCAATGCTTTTCGTTAATTCATCGTGT
GGAActttttcttctgtttctaCTTCTGCTTCTACTTCTACTTCTACTTC
TGAATCATTATtcaatttaaataaaatttcttgaaaCCTCTTGATCTCGT
TTATCAAACTTGGTAACATCGTATAATGAGCCATTACTTTGTTTTTCGTT
TCTGGGTTTACGATAGATGGTTGAGAAAACataagaaaatgttttgtttt
atcTTCAGTTGCACTATGTAACGATAAATCAATatccatatattttttat
tcatagTTCTCAAATGTCTAATCCAATCGTCAAATAAGTGTTCACGTCTT
TGatgttttgttaatttcatcGGTGCCATTGGATGTTCTAGCTTTCTTTT
TCTAGTCGTTTTAGGTGTTTTTTTTNTGTTAATTTCATCGGTGCCATTGG
ATGTTCTAGCTTTCTTTTTCTAGTCGTTTTAGgtgctttttttcatttta
ctcTCAACCATTTTGATAAGAAGCAAAAGAAGGTTTGAAGATAAATCATC
gtatattttt

Coding sequence (CDS) from alignment at sc0007421:4..613

>TCONS_00045288 ID=TCONS_00045288|Name=TCONS_00045288|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0007421:4..613 (Clytia hemisphaerica)
ATAAAACCATGAAAGCAGCAGACTTGCATATATTGGAATCATCTCATGCT
GATATTCATTGAGAGTTACCTCATCAATGCTTTTCGTTAATTCATCGTGT
GGAActttttcttctgtttctaCTTCTGCTTCTACTTCTACTTCTACTTC
TGAATCATTATtcaatttaaataaaatttcttgaaaCCTCTTGATCTCGT
TTATCAAACTTGGTAACATCGTATAATGAGCCATTACTTTGTTTTTCGTT
TCTGGGTTTACGATAGATGGTTGAGAAAACataagaaaatgttttgtttt
atcTTCAGTTGCACTATGTAACGATAAATCAATatccatatattttttat
tcatagTTCTCAAATGTCTAATCCAATCGTCAAATAAGTGTTCACGTCTT
TGatgttttgttaatttcatcGGTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028869XLOC_028869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045288-exon-sc0007421-1491911889:4..613TCONS_00045288-exon-sc0007421-1491911889:4..613Clytia hemisphaericaexon
TCONS_00045288-exon-sc0007421-1510915933:4..613TCONS_00045288-exon-sc0007421-1510915933:4..613Clytia hemisphaericaexon
TCONS_00045288-exon-sc0007421-1575043694:4..613TCONS_00045288-exon-sc0007421-1575043694:4..613Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045288-proteinTCONS_00045288-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007421supercontigsc0007421:4..613 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0862753	0.157682	0	0.433518	0.592581	0.166282	0.869471	0.372773	2.01864	0	0.294613	0.0588407	0	0.18254	0.593044	0.689384	0.810879	0.658343	0.649837	0.565392	0.625858	0	1.01036	0	0	0.821137	0.25894	0.556749	0.469592
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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