TCONS_00045322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045322
Unique NameTCONS_00045322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045322 ID=TCONS_00045322|Name=TCONS_00045322|organism=Clytia hemisphaerica|type=transcript|length=348bp
agAAACAAAAAGTCACACTTATTCCTGGTGATGGCATTGGACCAGAAATC
TCCCGGTCTGTCGAGCGCATCTTTGAAGCTGCTCAAGCACCAATAGAGTT
TGAGCCAGTTGATGTCACACCAGTTGTCGGTTTGGATGGAAAAACACAGA
TTCCTGCTGAAGCCATCGAATCAGTCAATAGAAATAAAATAGGATTGAAA
ggtcaggccatattttagaaaggcaaggcagcgtccgttggtggctaaaa
agggcactttttctagtgtttttctactaaaaaggctgtttttaccaata
ttttagtaatttcaagagGGGCAGCGTCTGATAACCGGACGTTTAAAG
Run BLAST on NCBI

transcript from alignment at sc0007504:242..802+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045322 ID=TCONS_00045322|Name=TCONS_00045322|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at sc0007504:242..802+ (Clytia hemisphaerica)
agAAACAAAAAGTCACACTTATTCCTGGTGATGGCATTGGACCAGAAATC
TCCCGGTCTGTCGAGCGCATCTTTGAAGCTGCTCAAGTAAGTAAACTATT
ATCAAACAAACATGTCTTTgtaaatatcaatttttaaagTCTTATTAACC
CTTACATACATGGATCAAGAATTCCACTTAAAAGAATTGAAAGATTGATT
TATACTGGCTAGATCTTGGTATGAAAGACACACCTTGCGAGGAATACCAC
ATCACAAACATGGTCATcttattttttgagtttggttCTTTTTTTCTAGG
CACCAATAGAGTTTGAGCCAGTTGATGTCACACCAGTTGTCGGTTTGGAT
GGAAAAACACAGATTCCTGCTGAAGCCATCGAATCAGTCAATAGAAATAA
AATAGGATTGAAAggtcaggccatattttagaaaggcaaggcagcgtccg
ttggtggctaaaaagggcactttttctagtgtttttctactaaaaaggct
gtttttaccaatattttagtaatttcaagagGGGCAGCGTCTGATAACCG
GACGTTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028903XLOC_028903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045322-exon-sc0007504-1491911889:242..327TCONS_00045322-exon-sc0007504-1491911889:242..327Clytia hemisphaericaexon
TCONS_00045322-exon-sc0007504-1510915933:242..327TCONS_00045322-exon-sc0007504-1510915933:242..327Clytia hemisphaericaexon
TCONS_00045322-exon-sc0007504-1575043694:242..327TCONS_00045322-exon-sc0007504-1575043694:242..327Clytia hemisphaericaexon
TCONS_00045322-exon-sc0007504-1491911889:541..802TCONS_00045322-exon-sc0007504-1491911889:541..802Clytia hemisphaericaexon
TCONS_00045322-exon-sc0007504-1510915933:541..802TCONS_00045322-exon-sc0007504-1510915933:541..802Clytia hemisphaericaexon
TCONS_00045322-exon-sc0007504-1575043694:541..802TCONS_00045322-exon-sc0007504-1575043694:541..802Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007504supercontigsc0007504:242..802 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
139.065	148.617	231.27	226.33	16.503	12.5206	26.012	29.0712	103.934	97.6686	97.6259	108.029	109.262	122.853	75.757	84.3531	287.357	311.405	96.8517	78.5823	164.036	172.536	80.6538	89.8823	78.0767	77.8986	57.0791	64.1066	48.3037	41.5615
Blast
[Close]
BLAST of TCONS_00045322 vs. Swiss-Prot (Human)
Match: IDH3A (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens GN=IDH3A PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.273e-20
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 3 
Query:    6 QKVTLIPGDGIGPEISRSVERIFEAAQAPIEFEPVDVTPVVGLDGKTQIPAEAIESVNRNKIGLKG 203
            Q VTLIPGDGIGPEIS +V +IF+AA+API++E  +VT + G  GK  IP+EA ES+++NK+GLKG
Sbjct:   32 QTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKG 97
The following BLAST results are available for this feature:
BLAST of TCONS_00045322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IDH3A3.273e-2062.12Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
back to top