TCONS_00045338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045338
Unique NameTCONS_00045338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045338 ID=TCONS_00045338|Name=TCONS_00045338|organism=Clytia hemisphaerica|type=transcript|length=446bp
CCGCCGGTAAAAACGTCATACAGAACAAAACAGTGGGTTGGTTCTTCCAA
TTACGCAGAGTACGGTTTTTATATTTCGGTGGCTCTGTATGTAGGATATT
TCCTTCAGATAAAAGCATCTCCAAAGAAGAGTACGTCAACCTATCGAAAT
CAGTACACAAGTCAAGCTCCGTATAATTGAAAGAGTTCCTGACAATTCTT
TGATACGGAAAGTGTTGAAAATGTTTGTCTAGATACATCATCTGTGCAAC
TTTTTGATGAAACTCTGCTTGGTGGTTGAAAGAGGTTCGATTGTGATATT
GTNAATTCTTTGATACGGAAAGTGTTGAAAATGTTTGTCTAGATACATCA
TCTGTGCAACTTTTTGATGAAACTCTGCTTGGTGGTTGAAAGAGGTTCGA
TTGTGATATTGTAAACACGAAGAGAAAAAACCAAACACTCTGTACT
Run BLAST on NCBI

protein sequence of TCONS_00045338-protein

>TCONS_00045338-protein ID=TCONS_00045338-protein|Name=TCONS_00045338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
VQSVWFFLFVFTISQSNLFQPPSRVSSKSCTDDVSRQTFSTLSVSKNXQY
HNRTSFNHQAEFHQKVAQMMYLDKHFQHFPYQRIVRNSFNYTELDLCTDF
DRLTYSSLEMLLSEGNILHTEPPKYKNRTLRNWKNQPTVLFCMTFLPA
Run BLAST on NCBI

transcript from alignment at sc0007548:412..857

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045338 ID=TCONS_00045338|Name=TCONS_00045338|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at sc0007548:412..857 (Clytia hemisphaerica)
AGTACAGAGTGTTTGGTTTTTTCTCTTCGTGTTTACAATATCACAATCGA
ACCTCTTTCAACCACCAAGCAGAGTTTCATCAAAAAGTTGCACAGATGAT
GTATCTAGACAAACATTTTCAACACTTTCCGTATCAAAGAATTNACAATA
TCACAATCGAACCTCTTTCAACCACCAAGCAGAGTTTCATCAAAAAGTTG
CACAGATGATGTATCTAGACAAACATTTTCAACACTTTCCGTATCAAAGA
ATTGTCAGGAACTCTTTCAATTATACGGAGCTTGACTTGTGTACTGATTT
CGATAGGTTGACGTACTCTTCTTTGGAGATGCTTTTATCTGAAGGAAATA
TCCTACATACAGAGCCACCGAAATATAAAAACCGTACTCTGCGTAATTGG
AAGAACCAACCCACTGTTTTGTTCTGTATGACGTTTTTACCGGCGG

Coding sequence (CDS) from alignment at sc0007548:412..857

>TCONS_00045338 ID=TCONS_00045338|Name=TCONS_00045338|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0007548:412..857 (Clytia hemisphaerica)
GTACAGAGTGTTTGGTTTTTTCTCTTCGTGTTTACAATATCACAATCGAA
CCTCTTTCAACCACCAAGCAGAGTTTCATCAAAAAGTTGCACAGATGATG
TATCTAGACAAACATTTTCAACACTTTCCGTATCAAAGAATTNACAATAT
CACAATCGAACCTCTTTCAACCACCAAGCAGAGTTTCATCAAAAAGTTGC
ACAGATGATGTATCTAGACAAACATTTTCAACACTTTCCGTATCAAAGAA
TTGTCAGGAACTCTTTCAATTATACGGAGCTTGACTTGTGTACTGATTTC
GATAGGTTGACGTACTCTTCTTTGGAGATGCTTTTATCTGAAGGAAATAT
CCTACATACAGAGCCACCGAAATATAAAAACCGTACTCTGCGTAATTGGA
AGAACCAACCCACTGTTTTGTTCTGTATGACGTTTTTACCGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028919XLOC_028919Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045338-proteinTCONS_00045338-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045338-exon-sc0007548-1491911889:412..857TCONS_00045338-exon-sc0007548-1491911889:412..857Clytia hemisphaericaexon
TCONS_00045338-exon-sc0007548-1510915933:412..857TCONS_00045338-exon-sc0007548-1510915933:412..857Clytia hemisphaericaexon
TCONS_00045338-exon-sc0007548-1575043694:412..857TCONS_00045338-exon-sc0007548-1575043694:412..857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007548supercontigsc0007548:412..857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149695	0.437929	0.508477	0.331644	0	0.159522	1.73211	0.720703	0.126145	0.312502	0	0.598177	1.19469	0.413566	0	0	0.224751	0.345544	1.27303	3.16383	0.434201	0.635364	0.343275	0.312087	0.160721	0.573759	0	0	0	0.16928
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top