TCONS_00045346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045346
Unique NameTCONS_00045346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045346 ID=TCONS_00045346|Name=TCONS_00045346|organism=Clytia hemisphaerica|type=transcript|length=387bp
AAGTGAGCaagataaaaatttaaaagcttGCTTTTTACAAGCATTAATAT
ATATTCCAGATGTATGTTAAAGCACCACAAAAAGAAAGGAAAGTTGCAAG
AATATTATaggtgaaaatttcatgaaGTTTTGTTGACCAGTTCTTGAGAC
gtccatttttattatttgatgacatcatcactGGTTTTAAGACAGGTTTT
AAGCCAAAATCTCAACTAGACATAAAGCAATAACAATACTAAATAATGTT
TTCAATTGCAAGAAGTGGTATTGATGACTTAATTAGAGGAATCTGTGAGG
ATGTGGAAACTAAATTTCATAACTTGAAGATTTACTTGTGTGAACATGTT
GGTACTTTTTCTGAACATTTATATGAAGAGTGTCATG
Run BLAST on NCBI

transcript from alignment at sc0007577:1..387

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045346 ID=TCONS_00045346|Name=TCONS_00045346|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0007577:1..387 (Clytia hemisphaerica)
CATGACACTCTTCATATAAATGTTCAGAAAAAGTACCAACATGTTCACAC
AAGTAAATCTTCAAGTTATGAAATTTAGTTTCCACATCCTCACAGATTCC
TCTAATTAAGTCATCAATACCACTTCTTGCAATTGAAAACATTATTTAGT
ATTGTTATTGCTTTATGTCTAGTTGAGATTTTGGCTTAAAACCTGTCTTA
AAACCagtgatgatgtcatcaaataataaaaatggacGTCTCAAGAACTG
GTCAACAAAACttcatgaaattttcacctATAATATTCTTGCAACTTTCC
TTTCTTTTTGTGGTGCTTTAACATACATCTGGAATATATATTAATGCTTG
TAAAAAGCaagcttttaaatttttatcttGCTCACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028927XLOC_028927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045346-exon-sc0007577-1491911889:1..387TCONS_00045346-exon-sc0007577-1491911889:1..387Clytia hemisphaericaexon
TCONS_00045346-exon-sc0007577-1510915933:1..387TCONS_00045346-exon-sc0007577-1510915933:1..387Clytia hemisphaericaexon
TCONS_00045346-exon-sc0007577-1575043694:1..387TCONS_00045346-exon-sc0007577-1575043694:1..387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007577supercontigsc0007577:1..387 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.60024	2.35627	13.1101	11.6313	3.73455	3.21774	3.78176	3.35386	0.503872	1.24825	0.807724	0.927259	0.451866	0.462626	0	0.121456	0	0.306719	0	0.221711	0.770829	0.563975	1.96173	3.85434	2.07574	3.72582	0.0880259	0.291671	0.799768	1.12695
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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