TCONS_00045353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045353
Unique NameTCONS_00045353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045353 ID=TCONS_00045353|Name=TCONS_00045353|organism=Clytia hemisphaerica|type=transcript|length=811bp
CAGACCAGAGAATGTAGGAGATGCCAGGTGAGATTTTGCTAGTCTGTAAA
TTAGTCACCGGGGAAGCCGAATTATTTTCCGGTCTGGGAATTGAAACTCT
CATTAAAGAAGAGTCATACTAAGGGAGTGGTGGCGCTCacgaaaatttta
ttttcacagCATAGATGTTCAAAAAACTTTCACATTTCACTAAATTATCG
ATATCATCAGCTGGTCTGATTCAAAGAGAAACAGTTGAAAGACAATTCTT
GTGTCAGTAGTgcaatatttttgtgaaattacaTTTTGTTTCGTTGAAAA
CACAGAATTGTCATAGCAAAAATGAACACCATGGCGCCAAAAATCTACTG
CTTCATTATGATTCTACTTTCTTTTAATCTCTCACTCACAGTTTTAAGGC
CAATGCTAAAAGTATTGTTATTGTCCACCTCAAAAACTGGTGAAAATCTG
TCTGTCTCGGTTTACCAGAGATGCTATTTTGACACTGTAAAATACATTTA
CACTTGAGGTCAGAAACAGGGAGataaaagtcagaaaaaaactgGCTTAG
CATAATTAGAGAAGAGAACTAATCTGAAATACCCTTCTTGTATGCTGTTT
TGAACTTTTACGGTTGTCTTTTCAGTACGATGAGCTCCCACTTCCATAGA
TTACAGTGGATTTTGCACATCTACCATTTAAGCGTCATTCGGCGTCCTCC
ATTTTTGAAGGACGTCGAAGAAGCTTTCCCGTTTATGAATTTTTCGACAA
GGAACCCCCGCAAAGAAATTTGGATCACGTGTTATTAAAAGTTCTAAAAG
ACATTACCCGA
Run BLAST on NCBI

transcript from alignment at sc0007586:21..831

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045353 ID=TCONS_00045353|Name=TCONS_00045353|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0007586:21..831 (Clytia hemisphaerica)
TCGGGTAATGTCTTTTAGAACTTTTAATAACACGTGATCCAAATTTCTTT
GCGGGGGTTCCTTGTCGAAAAATTCATAAACGGGAAAGCTTCTTCGACGT
CCTTCAAAAATGGAGGACGCCGAATGACGCTTAAATGGTAGATGTGCAAA
ATCCACTGTAATCTATGGAAGTGGGAGCTCATCGTACTGAAAAGACAACC
GTAAAAGTTCAAAACAGCATACAAGAAGGGTATTTCAGATTAGTTCTCTT
CTCTAATTATGCTAAGCcagtttttttctgacttttatCTCCCTGTTTCT
GACCTCAAGTGTAAATGTATTTTACAGTGTCAAAATAGCATCTCTGGTAA
ACCGAGACAGACAGATTTTCACCAGTTTTTGAGGTGGACAATAACAATAC
TTTTAGCATTGGCCTTAAAACTGTGAGTGAGAGATTAAAAGAAAGTAGAA
TCATAATGAAGCAGTAGATTTTTGGCGCCATGGTGTTCATTTTTGCTATG
ACAATTCTGTGTTTTCAACGAAACAAAAtgtaatttcacaaaaatattgc
ACTACTGACACAAGAATTGTCTTTCAACTGTTTCTCTTTGAATCAGACCA
GCTGATGATATCGATAATTTAGTGAAATGTGAAAGTTTTTTGAACATCTA
TGctgtgaaaataaaattttcgtGAGCGCCACCACTCCCTTAGTATGACT
CTTCTTTAATGAGAGTTTCAATTCCCAGACCGGAAAATAATTCGGCTTCC
CCGGTGACTAATTTACAGACTAGCAAAATCTCACCTGGCATCTCCTACAT
TCTCTGGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028933XLOC_028933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045353-exon-sc0007586-1491911889:21..831TCONS_00045353-exon-sc0007586-1491911889:21..831Clytia hemisphaericaexon
TCONS_00045353-exon-sc0007586-1510915933:21..831TCONS_00045353-exon-sc0007586-1510915933:21..831Clytia hemisphaericaexon
TCONS_00045353-exon-sc0007586-1575043694:21..831TCONS_00045353-exon-sc0007586-1575043694:21..831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007586supercontigsc0007586:21..831 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59119	1.03444	1.93509	1.95846	5.3248	5.33816	4.31877	4.04318	6.1084	7.32019	12.4191	12.0887	13.5613	19.0494	10.8424	12.9284	7.65367	11.0189	9.89826	9.24337	8.60396	11.0059	6.75716	8.47767	9.04817	8.18821	9.77789	8.02047	10.662	10.5963
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top