TCONS_00045355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045355
Unique NameTCONS_00045355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045355 ID=TCONS_00045355|Name=TCONS_00045355|organism=Clytia hemisphaerica|type=transcript|length=833bp
ATGATGATTGTTGAACAACTGCGATTCCTCTCTGAAAGGTAATGGCATGA
CATACTTTATGTCGACAAACTTGCATTCATCATTCATCACGTCCATAAAT
GCTTTCTCATCTTGCGAATAATCGCGATCAAATTCTGAGGTTGATCGTTC
GTTGAAGTCATGTTCGTACATTGTCTGAAGCATCTCATGNTGCATTCATC
ATTCATCATGTCCATAAATGCTTTCTCATCTTGCGAATAATCGCGATCAA
ATTCTGAGGTTGATCGTTCGTTGAAGTCATGTTCGTACATTGTCTGAAGC
ATCTCATATAGCGAGCTGTCTTTCAATCTTTCTTCATATCGGTAGTAATG
ACATGATGGACAAGTCATCTCCTCGGGTTTAGAATGGACAAGATGGCTTG
AAAGTGACAATGACTTGGATCCTCTCAGTGTTCCGACAACACACCATCCG
AGCCTTGACTGGAATGCATAAGGTCCATCACCATGACCTTCAAGGGCTAA
TACCTTTGTACAATTGGAACCGATCAACAAAACTAACCTTGAAATCCTTT
AGTGATTTTGGTAAGTGGCATAAGATTGATGACAAGTGACTCCACTTCTT
GACATTATCGTACGTTGGAACATCTTCTATGTCAACCGGAAATTCCCTTT
GGGTATACAAACGTGGAAGTTCGATGGAGCTATCGCTTGTTGTAGAAGAG
ATGCAAAGATTTCCGATCAAATGGCACTTGTTGAGCTTCTTACCATGCAA
AGTCTTCACAGTGAGAGATGTGTGAATTTCTGAAGAACCAAATGACCTTG
AAATCTCGTCACTGATGAAGGATCCGTTACTTC
Run BLAST on NCBI

protein sequence of TCONS_00045355-protein

>TCONS_00045355-protein ID=TCONS_00045355-protein|Name=TCONS_00045355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
SNGSFISDEISRSFGSSEIHTSLTVKTLHGKKLNKCHLIGNLCISSTTSD
SSIELPRLYTQREFPVDIEDVPTYDNVKKWSHLSSILCHLPKSLKDFKVS
FVDRFQLYKGISP
Run BLAST on NCBI

transcript from alignment at sc0007593:3..835

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045355 ID=TCONS_00045355|Name=TCONS_00045355|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at sc0007593:3..835 (Clytia hemisphaerica)
GAAGTAACGGATCCTTCATCAGTGACGAGATTTCAAGGTCATTTGGTTCT
TCAGAAATTCACACATCTCTCACTGTGAAGACTTTGCATGGTAAGAAGCT
CAACAAGTGCCATTTGATCGGAAATCTTTGCATCTCTTCTACAACAAGCG
ATAGCTCCATCGAACTTCCACGTTTGTATACCCAAAGGGAATTTCCGGTT
GACATAGAAGATGTTCCAACGTACGATAATGTCAAGAAGTGGAGTCACTT
GTCATCAATCTTATGCCACTTACCAAAATCACTAAAGGATTTCAAGGTTA
GTTTTGTTGATCGGTTCCAATTGTACAAAGGTATTAGCCCTTGAAGGTCA
TGGTGATGGACCTTATGCATTCCAGTCAAGGCTCGGATGGTGTGTTGTCG
GAACACTGAGAGGATCCAAGTCATTGTCACTTTCAAGCCATCTTGTCCAT
TCTAAACCCGAGGAGATGACTTGTCCATCATGTCATTACTACCGATATGA
AGAAAGATTGAAAGACAGCTCGCTATATGAGATGCTTCAGACAATGTACG
AACATGACTTCAACGAACGATCAACCTCAGAATTTGATCGCGATTATTCG
CAAGATGAGAAAGCATTTATGGACATGATGAATGATGAATGCANCATGAG
ATGCTTCAGACAATGTACGAACATGACTTCAACGAACGATCAACCTCAGA
ATTTGATCGCGATTATTCGCAAGATGAGAAAGCATTTATGGACGTGATGA
ATGATGAATGCAAGTTTGTCGACATAAAGTATGTCATGCCATTACCTTTC
AGAGAGGAATCGCAGTTGTTCAACAATCATCAT

Coding sequence (CDS) from alignment at sc0007593:3..835

>TCONS_00045355 ID=TCONS_00045355|Name=TCONS_00045355|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0007593:3..835 (Clytia hemisphaerica)
AGTAACGGATCCTTCATCAGTGACGAGATTTCAAGGTCATTTGGTTCTTC
AGAAATTCACACATCTCTCACTGTGAAGACTTTGCATGGTAAGAAGCTCA
ACAAGTGCCATTTGATCGGAAATCTTTGCATCTCTTCTACAACAAGCGAT
AGCTCCATCGAACTTCCACGTTTGTATACCCAAAGGGAATTTCCGGTTGA
CATAGAAGATGTTCCAACGTACGATAATGTCAAGAAGTGGAGTCACTTGT
CATCAATCTTATGCCACTTACCAAAATCACTAAAGGATTTCAAGGTTAGT
TTTGTTGATCGGTTCCAATTGTACAAAGGTATTAGCCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028935XLOC_028935Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045355-proteinTCONS_00045355-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045355-exon-sc0007593-1491911889:3..835TCONS_00045355-exon-sc0007593-1491911889:3..835Clytia hemisphaericaexon
TCONS_00045355-exon-sc0007593-1510915933:3..835TCONS_00045355-exon-sc0007593-1510915933:3..835Clytia hemisphaericaexon
TCONS_00045355-exon-sc0007593-1575043694:3..835TCONS_00045355-exon-sc0007593-1575043694:3..835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007593supercontigsc0007593:3..835 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.23709	0.277215	0.128749	0	0.246339	0.499688	1.67995	2.16158	0.619112	0.695442	0.230408	1.17776	0.302502	0.274882	0.168001	0.277168	0.810941	0.656201	0.181316	0.126489	0.27737	0.0804388	0.195568	0.237066	0.84838	0.235202	0.07796	0	0.258581	0.514352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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