TCONS_00045361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045361
Unique NameTCONS_00045361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045361 ID=TCONS_00045361|Name=TCONS_00045361|organism=Clytia hemisphaerica|type=transcript|length=446bp
CTTTTAAATTAAGTTATACCATCGTATATAAATGaagtaaataataaaat
ttcacatctttaaaacttttttcattgTCTACTTTTATTGTAGGCTACCA
AAGAGGCCATCAAAGGTTTTTGTGCTTTTGATAACGAGGCTAGCGCCATT
CAAGAAAGGACGGTCACAGTTGTTTATGGCCCAAACATGGTTGACTTAAC
CTTTGTTAACTTTGTAACATCTAGTATATCAGAAGCTGGAGTATGGGCTA
AACATTTGTTCCGATGCACAAATAATCTTTTAGAAGATAATGCGTCACCA
CTAAAATGCCTGGAAAGATTGTAAGAGCCAATTCTTTAACTGAATTNTGC
GTCACCACTAAAATGCCTGGAAAGATTGTAAGAGCCAATTCTTTAACTGA
ATTGAAAAACATAATCTGggtattaaattttcatttgtcaTACAAG
Run BLAST on NCBI

transcript from alignment at sc0007610:200..701+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045361 ID=TCONS_00045361|Name=TCONS_00045361|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at sc0007610:200..701+ (Clytia hemisphaerica)
CTTTTAAATTAAGTTATACCATCGTATATAAATGaagtaaataataaaat
ttcacatctttaaaacttttttcattgTCTACTTTTATTGTAGGCTACCA
AAGAGGCCATCAAAGGTTTTTGTGCTTTTGATAACGAGGCTAGCGCCATT
CAAGAAAGGACGGTCACAGTTGTTTATGGCCCAAACATGGTTGACTTAAC
CTTTGTTAACTTTGTAACATCTANGTTGTTTATGGCCCAAATATGGTTGA
CTTAACCTTTGTTAACTTTGTAACATCTAGTATATCAGAAGCTGGAGTAT
GGGCTAAACATTTGTTCCGATGCACAAATAATCTTTTAGAAGATAATGCG
TCACCACTAAAATGCCTGGAAAGATTGTAAGAGCCAATTCTTTAACTGAA
TTNTGCGTCACCACTAAAATGCCTGGAAAGATTGTAAGAGCCAATTCTTT
AACTGAATTGAAAAACATAATCTGggtattaaattttcatttgtcaTACA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028941XLOC_028941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045361-exon-sc0007610-1491911889:200..417TCONS_00045361-exon-sc0007610-1491911889:200..417Clytia hemisphaericaexon
TCONS_00045361-exon-sc0007610-1510915933:200..417TCONS_00045361-exon-sc0007610-1510915933:200..417Clytia hemisphaericaexon
TCONS_00045361-exon-sc0007610-1575043694:200..417TCONS_00045361-exon-sc0007610-1575043694:200..417Clytia hemisphaericaexon
TCONS_00045361-exon-sc0007610-1491911889:474..701TCONS_00045361-exon-sc0007610-1491911889:474..701Clytia hemisphaericaexon
TCONS_00045361-exon-sc0007610-1510915933:474..701TCONS_00045361-exon-sc0007610-1510915933:474..701Clytia hemisphaericaexon
TCONS_00045361-exon-sc0007610-1575043694:474..701TCONS_00045361-exon-sc0007610-1575043694:474..701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007610supercontigsc0007610:200..701 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.24918	2.26228	2.02055	0	55.3509	36.8929	21.1077	24.9157	23.6097	25.8915	30.0125	28.6428	26.704	23.2952	11.5519	15.2243	19.157	24.8531	33.008	34.342	23.4654	25.6264	9.20756	13.0216	22.417	21.7167	17.1288	12.2739	7.92282	10.8973
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top