TCONS_00045363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045363
Unique NameTCONS_00045363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045363 ID=TCONS_00045363|Name=TCONS_00045363|organism=Clytia hemisphaerica|type=transcript|length=346bp
TATATGTGGCGAATATGGGCTCACGCCTAATGCTACTTAattaaatagat
agatagatagacaaACAGGATGATGTTTACTCACAGTTGCTCCTTTAGCA
GTTGGTTTGCCTGCAGCAATCAGTTCTTCAAGTTTTGATGCACCGTCAGC
ATCTCCAGGATATTTCTTCTCTGCCAATAATTTGACAGCAGCTTTGAATT
GCTTGAAGTTTATTTTGCGCTCAGTTTTTCTAAAATAGGTTAGTAGAGTG
ATAAGTAACTTTCCAAAATAAAGGATTAGTTGTGTTAGAATACAAGTTGG
ATGTAAAAACCACAAATGATGACAGAACCAAAATTCAATCTGTCTT
Run BLAST on NCBI

protein sequence of TCONS_00045363-protein

>TCONS_00045363-protein ID=TCONS_00045363-protein|Name=TCONS_00045363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
RQIEFWFCHHLWFLHPTCILTQLILYFGKLLITLLTYFRKTERKINFKQF
KAAVKLLAEKKYPGDADGASKLEELIAAGKPTAKGATVSKHHPVCLSIYL
FN
Run BLAST on NCBI

transcript from alignment at sc0007611:207..552

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045363 ID=TCONS_00045363|Name=TCONS_00045363|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0007611:207..552 (Clytia hemisphaerica)
AAGACAGATTGAATTTTGGTTCTGTCATCATTTGTGGTTTTTACATCCAA
CTTGTATTCTAACACAACTAATCCTTTATTTTGGAAAGTTACTTATCACT
CTACTAACCTATTTTAGAAAAACTGAGCGCAAAATAAACTTCAAGCAATT
CAAAGCTGCTGTCAAATTATTGGCAGAGAAGAAATATCCTGGAGATGCTG
ACGGTGCATCAAAACTTGAAGAACTGATTGCTGCAGGCAAACCAACTGCT
AAAGGAGCAACTGTGAGTAAACATCATCCTGTttgtctatctatctatct
atttaatTAAGTAGCATTAGGCGTGAGCCCATATTCGCCACATATA

Coding sequence (CDS) from alignment at sc0007611:207..552

>TCONS_00045363 ID=TCONS_00045363|Name=TCONS_00045363|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0007611:207..552 (Clytia hemisphaerica)
AGACAGATTGAATTTTGGTTCTGTCATCATTTGTGGTTTTTACATCCAAC
TTGTATTCTAACACAACTAATCCTTTATTTTGGAAAGTTACTTATCACTC
TACTAACCTATTTTAGAAAAACTGAGCGCAAAATAAACTTCAAGCAATTC
AAAGCTGCTGTCAAATTATTGGCAGAGAAGAAATATCCTGGAGATGCTGA
CGGTGCATCAAAACTTGAAGAACTGATTGCTGCAGGCAAACCAACTGCTA
AAGGAGCAACTGTGAGTAAACATCATCCTGTttgtctatctatctatcta
tttaatTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028943XLOC_028943Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045363-proteinTCONS_00045363-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045363-exon-sc0007611-1491911889:207..552TCONS_00045363-exon-sc0007611-1491911889:207..552Clytia hemisphaericaexon
TCONS_00045363-exon-sc0007611-1510915933:207..552TCONS_00045363-exon-sc0007611-1510915933:207..552Clytia hemisphaericaexon
TCONS_00045363-exon-sc0007611-1575043694:207..552TCONS_00045363-exon-sc0007611-1575043694:207..552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007611supercontigsc0007611:207..552 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13076	1.47645	9.33757	10.0661	29.8782	18.0624	35.7862	33.7473	29.7106	30.0184	27.1086	27.4081	7.26789	6.47623	8.74624	7.62404	6.05019	8.36252	13.0175	16.0952	8.99033	10.4675	8.89527	7.67192	1.32081	0	15.0012	12.7178	2.7409	5.28352
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008907P25-alpha
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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