TCONS_00045368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045368
Unique NameTCONS_00045368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045368 ID=TCONS_00045368|Name=TCONS_00045368|organism=Clytia hemisphaerica|type=transcript|length=660bp
GCGGGATGGAACACACGACACAAATGAAATGGTCAGAAACATCGACAGAT
TCGTCAAGAATGTCTTATTTAAAGGGAAAACTCCACCACCAAAAACCAAC
AGACGGTATTATCCAAAACCAAAAGACGTTGCAAATCACATTTTGAATGA
AGAGAACCGactaaaattttcgaaaattgatcAGGAAAATCTCGACCAGC
TCATCCACAAGTGGAAAGAGGAGTATCCTGAAGATCATTTTCACTATAGG
CCTTTCATAAAAGGATCAAAACCTGGCGTTAAAGAACAATTGTGGTTTAA
TGAAAATGGTGTGAGGATTGATAACGATTCGGATTTGGAAGACAATAAAA
CAGAGAATGGAAGCCAGCTTTTGATCGTGCACCAGACAAAAAGCCAACAA
AGACTACTAAGAAGGTATGGGAACAAAATGTCGCTGCTAGACGCAACCCA
TAAAACCACAAAGTATGCAGTGCCTTTGTTCTTTGTGGTGGTGAAGACTA
ATGTAGACTATCAGGTGGTAGCGTCATTTGCGACACAAGATGAGAGATAT
GAAACCATCTTAGAGGCCCTCTCAATAATCAAACGATGGACACCAGAGTG
GGATCCGAAAACCTTTATGATCGATAATTGTGAGGCTGAGATCAAATCTA
TAGAGACCAT
Run BLAST on NCBI

protein sequence of TCONS_00045368-protein

>TCONS_00045368-protein ID=TCONS_00045368-protein|Name=TCONS_00045368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
RDGTHDTNEMVRNIDRFVKNVLFKGKTPPPKTNRRYYPKPKDVANHILNE
ENRLKFSKIDQENLDQLIHKWKEEYPEDHFHYRPFIKGSKPGVKEQLWFN
ENGVRIDNDSDLEDNKTENGSQLLIVHQTKSQQRLLRRYGNKMSLLDATH
KTTKYAVPLFFVVVKTNVDYQVVASFATQDERYETILEALSIIKRWTPEW
DPKTFMIDNCEAEIKSIET
Run BLAST on NCBI

transcript from alignment at sc0007621:7..794+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045368 ID=TCONS_00045368|Name=TCONS_00045368|organism=Clytia hemisphaerica|type=transcript|length=788bp|location=Sequence derived from alignment at sc0007621:7..794+ (Clytia hemisphaerica)
GCGGGATGGAACACACGACACAAATGAAATGGTCAGAAACATCGACAGAT
TCGTCAAGAATGTCTTATTTAAAGGGAAAACTCCACCACCAAAAACCAAC
AGACGGTATTATCCAAAACCAAAAGACGTTGCAAATCACATTTTGAATGA
AGAGAACCGactaaaattttcgaaaattgatcAGGAAAATCTCGACCAGC
TCATCCACAAGTGGAAAGAGGAGTATCCTGAAGATCATTTTCACTATAGG
CCTTTCATAAAAGGATCAAAACCTGGCGTTAAAGAACAATTGTGGTTTAA
TGAAAATGGTGTGAGGATTGTAAGTTTATGAATAATTTCATCTATTTGAG
AGGGAGGAGGGCCAGCACTAAGTTTCCACAGAAACAATGAATGACCTTAC
CTTTcatctttcaatatttttcaataacaagGGCTATATCCTTTCAGGAT
AACGATTCGGATTTGGAAGACAATAAAACAGAGAATGGAAGCCAGCTTTT
GATCGTGCACCAGACAAAAAGCCAACAAAGACTACTAAGAAGGTATGGGA
ACAAAATGTCGCTGCTAGACGCAACCCATAAAACCACAAAGTATGCAGTG
CCTTTGTTCTTTGTGGTGGTGAAGACTAATGTAGACTATCAGGTGGTAGC
GTCATTTGCGACACAAGATGAGAGATATGAAACCATCTTAGAGGCCCTCT
CAATAATCAAACGATGGACACCAGAGTGGGATCCGAAAACCTTTATGATC
GATAATTGTGAGGCTGAGATCAAATCTATAGAGACCAT

Coding sequence (CDS) from alignment at sc0007621:7..794+

>TCONS_00045368 ID=TCONS_00045368|Name=TCONS_00045368|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0007621:7..794+ (Clytia hemisphaerica)
CGGGATGGAACACACGACACAAATGAAATGGTCAGAAACATCGACAGATT
CGTCAAGAATGTCTTATTTAAAGGGAAAACTCCACCACCAAAAACCAACA
GACGGTATTATCCAAAACCAAAAGACGTTGCAAATCACATTTTGAATGAA
GAGAACCGactaaaattttcgaaaattgatcAGGAAAATCTCGACCAGCT
CATCCACAAGTGGAAAGAGGAGTATCCTGAAGATCATTTTCACTATAGGC
CTTTCATAAAAGGATCAAAACCTGGCGTTAAAGAACAATTGTGGTTTAAT
GAAAATGGTGTGAGGATTGATAACGATTCGGATTTGGAAGACAATAAAAC
AGAGAATGGAAGCCAGCTTTTGATCGTGCACCAGACAAAAAGCCAACAAA
GACTACTAAGAAGGTATGGGAACAAAATGTCGCTGCTAGACGCAACCCAT
AAAACCACAAAGTATGCAGTGCCTTTGTTCTTTGTGGTGGTGAAGACTAA
TGTAGACTATCAGGTGGTAGCGTCATTTGCGACACAAGATGAGAGATATG
AAACCATCTTAGAGGCCCTCTCAATAATCAAACGATGGACACCAGAGTGG
GATCCGAAAACCTTTATGATCGATAATTGTGAGGCTGAGATCAAATCTAT
AGAGACCCGGGATGGAACACACGACACAAATGAAATGGTCAGAAACATCG
ACAGATTCGTCAAGAATGTCTTATTTAAAGGGAAAACTCCACCACCAAAA
ACCAACAGACGGTATTATCCAAAACCAAAAGACGTTGCAAATCACATTTT
GAATGAAGAGAACCGactaaaattttcgaaaattgatcAGGAAAATCTCG
ACCAGCTCATCCACAAGTGGAAAGAGGAGTATCCTGAAGATCATTTTCAC
TATAGGCCTTTCATAAAAGGATCAAAACCTGGCGTTAAAGAACAATTGTG
GTTTAATGAAAATGGTGTGAGGATTGATAACGATTCGGATTTGGAAGACA
ATAAAACAGAGAATGGAAGCCAGCTTTTGATCGTGCACCAGACAAAAAGC
CAACAAAGACTACTAAGAAGGTATGGGAACAAAATGTCGCTGCTAGACGC
AACCCATAAAACCACAAAGTATGCAGTGCCTTTGTTCTTTGTGGTGGTGA
AGACTAATGTAGACTATCAGGTGGTAGCGTCATTTGCGACACAAGATGAG
AGATATGAAACCATCTTAGAGGCCCTCTCAATAATCAAACGATGGACACC
AGAGTGGGATCCGAAAACCTTTATGATCGATAATTGTGAGGCTGAGATCA
AATCTATAGAGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028948XLOC_028948Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045368-proteinTCONS_00045368-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045368-exon-sc0007621-1491911889:7..325TCONS_00045368-exon-sc0007621-1491911889:7..325Clytia hemisphaericaexon
TCONS_00045368-exon-sc0007621-1510915933:7..325TCONS_00045368-exon-sc0007621-1510915933:7..325Clytia hemisphaericaexon
TCONS_00045368-exon-sc0007621-1575043694:7..325TCONS_00045368-exon-sc0007621-1575043694:7..325Clytia hemisphaericaexon
TCONS_00045368-exon-sc0007621-1491911889:454..794TCONS_00045368-exon-sc0007621-1491911889:454..794Clytia hemisphaericaexon
TCONS_00045368-exon-sc0007621-1510915933:454..794TCONS_00045368-exon-sc0007621-1510915933:454..794Clytia hemisphaericaexon
TCONS_00045368-exon-sc0007621-1575043694:454..794TCONS_00045368-exon-sc0007621-1575043694:454..794Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007621supercontigsc0007621:7..794 +
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029309CaRF
IPR018289MULE_transposase_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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