TCONS_00045371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045371
Unique NameTCONS_00045371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045371 ID=TCONS_00045371|Name=TCONS_00045371|organism=Clytia hemisphaerica|type=transcript|length=225bp
ACTCAACAGACATCAGACATGGTTTTAGAAAAAGTCGATAAAACCTCTgT
ATTGATTGGTAAAGAGCTTGTACATGGTGTTCATGAAAATTGGCAGGCGT
CTATGGATTTTACTCCTGAACTACATTCAAGTGTGATTAACATCCCTGAA
GCAGTAATGGGTGACATTGATGCAGATGGAGAGTTTTTTATCGCTAAAGT
CACTGTCGATGCTCATCTAGGTACA
Run BLAST on NCBI

transcript from alignment at sc0007627:11..819+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045371 ID=TCONS_00045371|Name=TCONS_00045371|organism=Clytia hemisphaerica|type=transcript|length=809bp|location=Sequence derived from alignment at sc0007627:11..819+ (Clytia hemisphaerica)
ACTCAACAGACATCAGACATGGTTTTAGAAAAAGTCGATAAAACCTCTGT
AAGTTTAAAGTTCAAATCCTGTGAAATAAGTTACGTTTCAGACAAGATTA
TTTGTATTTCTTTAAATGTTTGAGATCAATCATTTTCGTTAACTACaact
tttaaaaaagtttttattttgttcaacGGGTTAGGACGGGAGTAGAGCTG
GCTCCATCTCAAAAAAGGTTTAATTTCTTCTCTACCTTGGAACCAATCGC
ACGTGGTTGTGTCCCACGAAAGGTGGGATCCTAAGGGTTCGCCCCCTCTA
TCTTCTCTcatttttcctgttttaaaCTTGATGAATAAATGTTTTCTCGC
TTTTTACGGCAGACAGTGACCTAATCGGTAAAAGAAAAGTCTAGAAAGAT
GTGATCGCTTTTCAAAGTATTTATGATGGGCAAAAACATCATAAACGTAA
AATTAGAAAAGTTGAAATCTTcctattattttgattttccaacccttaca
gagacttcCAGGTTCCAAAAAGGCACTCTTAAGGGTGGCAGATGCACATG
CACGTAACCTTCACTTGCCAAGGTATCCCCAGGTATTTGACCAATTTATG
ATCatgtctttttgattttatttgacgtcaaggTATTGATTGGTAAAGAG
CTTGTACATGGTGTTCATGAAAATTGGCAGGCGTCTATGGATTTTACTCC
TGAACTACATTCAAGTGTGATTAACATCCCTGAAGCAGTAATGGGTGACA
TTGATGCAGATGGAGAGTTTTTTATCGCTAAAGTCACTGTCGATGCTCAT
CTAGGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028951XLOC_028951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045371-exon-sc0007627-1491911889:11..58TCONS_00045371-exon-sc0007627-1491911889:11..58Clytia hemisphaericaexon
TCONS_00045371-exon-sc0007627-1510915933:11..58TCONS_00045371-exon-sc0007627-1510915933:11..58Clytia hemisphaericaexon
TCONS_00045371-exon-sc0007627-1575043694:11..58TCONS_00045371-exon-sc0007627-1575043694:11..58Clytia hemisphaericaexon
TCONS_00045371-exon-sc0007627-1491911889:643..819TCONS_00045371-exon-sc0007627-1491911889:643..819Clytia hemisphaericaexon
TCONS_00045371-exon-sc0007627-1510915933:643..819TCONS_00045371-exon-sc0007627-1510915933:643..819Clytia hemisphaericaexon
TCONS_00045371-exon-sc0007627-1575043694:643..819TCONS_00045371-exon-sc0007627-1575043694:643..819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007627supercontigsc0007627:11..819 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.43119	3.34595	6.47494	6.33472	0	0	0	0	1.9276	0	1.15875	0	6.08527	0	1.29889	1.39391	0	0.88003	4.86324	16.5393	3.31747	3.23629	0	2.38446	6.13986	4.38374	0	0	0	2.58674
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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