TCONS_00045381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045381
Unique NameTCONS_00045381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045381 ID=TCONS_00045381|Name=TCONS_00045381|organism=Clytia hemisphaerica|type=transcript|length=426bp
GTCATATTTTACCTTACTATTTTTGcgaacaatttttttgtcaattgcTT
TAAACAAATcatcaaattttccttttttattacTGCTATCACAAAGACCT
TCGTAATTGACAAATTTTCTCTTTCGGTTTGGgtattcttttttaatttt
gtctGTTTCAATATTTTCCTTATTGACCGTTTCTTGTGGATTAGAATTAT
CAACAACATTAGCAGTTGCATCATGCACCACAAAATCTATCTCCTCgaca
gtttttctataaaaagcaaaaaaccatccaccttcattttctgaaaacat
TGCATTaatattttggtaaaatattttgtcaGGCTTTAAATCATCAATGT
ACACccatttgttttcaataaataAGCCACATGCAAAGTGGAAACCTAGA
TTTCGAACAACAGCTTTTAATTTATA
Run BLAST on NCBI

protein sequence of TCONS_00045381-protein

>TCONS_00045381-protein ID=TCONS_00045381-protein|Name=TCONS_00045381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
YKLKAVVRNLGFHFACGLFIENKWVYIDDLKPDKIFYQNINAMFSENEGG
WFFAFYRKTVEEIDFVVHDATANVVDNSNPQETVNKENIETDKIKKEYPN
RKRKFVNYEGLCDSSNKKGKFDDLFKAIDKKIVRKNSKVKYD
Run BLAST on NCBI

transcript from alignment at sc0007667:29..454

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045381 ID=TCONS_00045381|Name=TCONS_00045381|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at sc0007667:29..454 (Clytia hemisphaerica)
TATAAATTAAAAGCTGTTGTTCGAAATCTAGGTTTCCACTTTGCATGTGG
CTtatttattgaaaacaaatggGTGTACATTGATGATTTAAAGCCtgaca
aaatattttaccaaaatattAATGCAatgttttcagaaaatgaaggtgga
tggttttttgctttttatagaaaaactgtcGAGGAGATAGATTTTGTGGT
GCATGATGCAACTGCTAATGTTGTTGATAATTCTAATCCACAAGAAACGG
TCAATAAGGAAAATATTGAAACagacaaaattaaaaaagaatacCCAAAC
CGAAAGAGAAAATTTGTCAATTACGAAGGTCTTTGTGATAGCAgtaataa
aaaaggaaaatttgatgATTTGTTTAAAgcaattgacaaaaaaattgttc
gCAAAAATAGTAAGGTAAAATATGAC

Coding sequence (CDS) from alignment at sc0007667:29..454

>TCONS_00045381 ID=TCONS_00045381|Name=TCONS_00045381|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0007667:29..454 (Clytia hemisphaerica)
TATAAATTAAAAGCTGTTGTTCGAAATCTAGGTTTCCACTTTGCATGTGG
CTtatttattgaaaacaaatggGTGTACATTGATGATTTAAAGCCtgaca
aaatattttaccaaaatattAATGCAatgttttcagaaaatgaaggtgga
tggttttttgctttttatagaaaaactgtcGAGGAGATAGATTTTGTGGT
GCATGATGCAACTGCTAATGTTGTTGATAATTCTAATCCACAAGAAACGG
TCAATAAGGAAAATATTGAAACagacaaaattaaaaaagaatacCCAAAC
CGAAAGAGAAAATTTGTCAATTACGAAGGTCTTTGTGATAGCAgtaataa
aaaaggaaaatttgatgATTTGTTTAAAgcaattgacaaaaaaattgttc
gCAAAAATAGTAAGGTAAAATATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028961XLOC_028961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045381-exon-sc0007667-1491911889:29..454TCONS_00045381-exon-sc0007667-1491911889:29..454Clytia hemisphaericaexon
TCONS_00045381-exon-sc0007667-1510915933:29..454TCONS_00045381-exon-sc0007667-1510915933:29..454Clytia hemisphaericaexon
TCONS_00045381-exon-sc0007667-1575043694:29..454TCONS_00045381-exon-sc0007667-1575043694:29..454Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045381-proteinTCONS_00045381-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007667supercontigsc0007667:29..454 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163492	0.15943	0	0	0.220478	0.174225	0.210195	0.590345	0.551086	0.682609	0.165639	0.108885	0.543667	0.338762	0	0	0	0.125797	0	0	0	0.231308	0	0	0	0.31332	0.22418	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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