TCONS_00045386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045386
Unique NameTCONS_00045386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045386 ID=TCONS_00045386|Name=TCONS_00045386|organism=Clytia hemisphaerica|type=transcript|length=741bp
CCATGGCtggtttttggatttttgtatgcttttataaaaacatgttaatt
tgctgtaacaaaatttaaaaaatgtaggcagcaaaatttaatctccgaaa
tcttttacattttttctgtcCAATAAAGTTTTCTGATTTAGGCACAACTC
GACGAAGTTAATTTTCAGGCACTCCCACAAAACTTCAATTGATTCTAAAT
TTTAGAACATTGCTGGTAGTGGTACAAATCATTTTGCTATTTTCCTTTTA
GTTTCCACAATGGGTGCCTATAAATATTTGGAAGAATTGTACAAAAGGAA
GCAGTGTGATTTGCTTCGATTTTTATTCCGTGTTCGATGCTGGCAATTAC
GTCACTTGAACACCATCCACAGAGCATCAAGACCAACACGTCCTGACAAA
GCCCGACGACTTGGATACAAAGCTAAACAAGGTTATGTTGTATACCGTGT
CCGTGTTCGACGTGGTGGACGCAAGAAGCCTCTTCCAAAAGGTATCACTT
ACGGTAAACCAAAGGGAGAAGGTATCAACCAAATCAAATTCCAAAGAAGC
ATCAGATCTGTTGCTGAGGTgagttaaaattttctttgggtGTTCCAAAT
GTTTCCTTTCAATATATACAAGTCCAAATGATGAATAAAATGATGATTTC
CGTTCTACTGAAAAGTGAATGATGGTTTTTCTACATGATCTGATGGACAG
ttctctttttcttcaaaaaatccaCAGTAATTAATGCTGTG
Run BLAST on NCBI

protein sequence of TCONS_00045386-protein

>TCONS_00045386-protein ID=TCONS_00045386-protein|Name=TCONS_00045386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MGAYKYLEELYKRKQCDLLRFLFRVRCWQLRHLNTIHRASRPTRPDKARR
LGYKAKQGYVVYRVRVRRGGRKKPLPKGITYGKPKGEGINQIKFQRSIRS
VAEVS
Run BLAST on NCBI

transcript from alignment at sc0007681:3..743

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045386 ID=TCONS_00045386|Name=TCONS_00045386|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at sc0007681:3..743 (Clytia hemisphaerica)
CACAGCATTAATTACTGtggattttttgaagaaaaagagaaCTGTCCATC
AGATCATGTAGAAAAACCATCATTCACTTTTCAGTAGAACGGAAATCATC
ATTTTATTCATCATTTGGACTTGTATATATTGAAAGGAAACATTTGGAAC
acccaaagaaaattttaactcACCTCAGCAACAGATCTGATGCTTCTTTG
GAATTTGATTTGGTTGATACCTTCTCCCTTTGGTTTACCGTAAGTGATAC
CTTTTGGAAGAGGCTTCTTGCGTCCACCACGTCGAACACGGACACGGTAT
ACAACATAACCTTGTTTAGCTTTGTATCCAAGTCGTCGGGCTTTGTCAGG
ACGTGTTGGTCTTGATGCTCTGTGGATGGTGTTCAAGTGACGTAATTGCC
AGCATCGAACACGGAATAAAAATCGAAGCAAATCACACTGCTTCCTTTTG
TACAATTCTTCCAAATATTTATAGGCACCCATTGTGGAAACTAAAAGGAA
AATAGCAAAATGATTTGTACCACTACCAGCAATGTTCTAAAATTTAGAAT
CAATTGAAGTTTTGTGGGAGTGCCTGAAAATTAACTTCGTCGAGTTGTGC
CTAAATCAGAAAACTTTATTGgacagaaaaaatgtaaaagatttcggaga
ttaaattttgctgcctacattttttaaattttgttacagcaaattaacat
gtttttataaaagcatacaaaaatccaaaaaccaGCCATGG

Coding sequence (CDS) from alignment at sc0007681:3..743

>TCONS_00045386 ID=TCONS_00045386|Name=TCONS_00045386|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0007681:3..743 (Clytia hemisphaerica)
ttaactcACCTCAGCAACAGATCTGATGCTTCTTTGGAATTTGATTTGGT
TGATACCTTCTCCCTTTGGTTTACCGTAAGTGATACCTTTTGGAAGAGGC
TTCTTGCGTCCACCACGTCGAACACGGACACGGTATACAACATAACCTTG
TTTAGCTTTGTATCCAAGTCGTCGGGCTTTGTCAGGACGTGTTGGTCTTG
ATGCTCTGTGGATGGTGTTCAAGTGACGTAATTGCCAGCATCGAACACGG
AATAAAAATCGAAGCAAATCACACTGCTTCCTTTTGTACAATTCTTCCAA
ATATTTATAGGCACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028966XLOC_028966Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045386-proteinTCONS_00045386-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045386-exon-sc0007681-1491911889:3..743TCONS_00045386-exon-sc0007681-1491911889:3..743Clytia hemisphaericaexon
TCONS_00045386-exon-sc0007681-1510915933:3..743TCONS_00045386-exon-sc0007681-1510915933:3..743Clytia hemisphaericaexon
TCONS_00045386-exon-sc0007681-1575043694:3..743TCONS_00045386-exon-sc0007681-1575043694:3..743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007681supercontigsc0007681:3..743 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1327.61	1267.58	1405.86	1463.7	657.671	553.741	865.689	965.362	1964	1661.55	2247.9	2396.2	2809.37	2680.12	2820.85	2623.39	2953.26	3148.04	1722.14	1843.71	3075.82	3027.48	2121.76	2140.66	1312.85	1451.25	2617.25	2806.18	1710.63	1852.96
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000439Ribosomal_L15e
IPR024794Rbsml_L15e_core_dom
IPR020925Ribosomal_L15e_CS
IPR012678Ribosomal_L23/L15e_core_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00045386 vs. Swiss-Prot (Human)
Match: RL15 (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.156e-38
Identity = 75/103 (72.82%), Postives = 92/103 (89.32%), Query Frame = 2 
Query:  260 MGAYKYLEELYKRKQCDLLRFLFRVRCWQLRHLNTIHRASRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXKKPLPKGITYGKPKGEGINQIKFQRSIRSVAE 568
            MGAYKY++EL+++KQ D++RFL RVRCWQ R L+ +HRA RPTRPDKARRLGYKAKQGYV+YR+RVRRGGRK+P+PKG TYGKP   G+NQ+KF RS++SVAE
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAE 103
The following BLAST results are available for this feature:
BLAST of TCONS_00045386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL155.156e-3872.8260S ribosomal protein L15 OS=Homo sapiens GN=RPL15... [more]
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