TCONS_00045405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045405
Unique NameTCONS_00045405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045405 ID=TCONS_00045405|Name=TCONS_00045405|organism=Clytia hemisphaerica|type=transcript|length=369bp
TTCAGATATAAACGAATGTGAAGATGAGAAGATGAATGTCTGCAACAAAG
ATCGGGGCCAATGCACCAACATCGAAGGCGCTTTCAAATGTCATTGTTTG
TACCCGTTCATTGGTGATGGAATCAATTGCGACAAAATGCAAGAAACCCA
ATACAACGTAATGATGTCGTTTGCTGGTCAAATATGGAATGATCAAATGT
TAGATGAATCTTCTGAACAGTTCCAAAATATGGCTCAAATCATTCAAACT
CAGGTATATTTTAATTTAAAGAATCTTACCCACGAACTTTCAGATTTATT
GCACTCGCTGAGAGATATGGTCTGTGTTAGTTTTTAATACAACATGCTat
gtttttgtaaatttcttat
Run BLAST on NCBI

protein sequence of TCONS_00045405-protein

>TCONS_00045405-protein ID=TCONS_00045405-protein|Name=TCONS_00045405-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
SDINECEDEKMNVCNKDRGQCTNIEGAFKCHCLYPFIGDGINCDKMQETQ
YNVMMSFAGQIWNDQMLDESSEQFQNMAQIIQTQVYFNLKNLTHELSDLL
HSLRDMVCVSF
Run BLAST on NCBI

transcript from alignment at sc0007739:27..541+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045405 ID=TCONS_00045405|Name=TCONS_00045405|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at sc0007739:27..541+ (Clytia hemisphaerica)
TTCAGATATAAACGAATGTGAAGATGAGAAGATGAATGTCTGCAACAAAG
ATCGGGGCCAATGCACCAACATCGAAGGCGCTTTCAAATGTCATTGTTTG
TACCCGTTCATTGGTGATGGAATCAATTGCGACAGTAAGTTCTCCTTCAT
TTATATCCTTTATCTCTAAACACTCTTCCAGAGAGCGCTTTTGGATCTTC
CTTTCTCTTAAAGTTCGCTCTACTTTTTGAAACTCGGGTCTAATAAACAA
ATACTCATAGATCAGTGATTTCTTTCTTAGAAATGCAAGAAACCCAATAC
AACGTAATGATGTCGTTTGCTGGTCAAATATGGAATGATCAAATGTTAGA
TGAATCTTCTGAACAGTTCCAAAATATGGCTCAAATCATTCAAACTCAGG
TATATTTTAATTTAAAGAATCTTACCCACGAACTTTCAGATTTATTGCAC
TCGCTGAGAGATATGGTCTGTGTTAGTTTTTAATACAACATGCTatgttt
ttgtaaatttcttat

Coding sequence (CDS) from alignment at sc0007739:27..541+

>TCONS_00045405 ID=TCONS_00045405|Name=TCONS_00045405|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0007739:27..541+ (Clytia hemisphaerica)
TCAGATATAAACGAATGTGAAGATGAGAAGATGAATGTCTGCAACAAAGA
TCGGGGCCAATGCACCAACATCGAAGGCGCTTTCAAATGTCATTGTTTGT
ACCCGTTCATTGGTGATGGAATCAATTGCGACAAAATGCAAGAAACCCAA
TACAACGTAATGATGTCGTTTGCTGGTCAAATATGGAATGATCAAATGTT
AGATGAATCTTCTGAACAGTTCCAAAATATGGCTCAAATCATTCAAACTC
AGGTATATTTTAATTTAAAGAATCTTACCCACGAACTTTCAGATTTATTG
CACTCGCTGAGAGATATGGTCTGTGTTAGTTTTTAATCAGATATAAACGA
ATGTGAAGATGAGAAGATGAATGTCTGCAACAAAGATCGGGGCCAATGCA
CCAACATCGAAGGCGCTTTCAAATGTCATTGTTTGTACCCGTTCATTGGT
GATGGAATCAATTGCGACAAAATGCAAGAAACCCAATACAACGTAATGAT
GTCGTTTGCTGGTCAAATATGGAATGATCAAATGTTAGATGAATCTTCTG
AACAGTTCCAAAATATGGCTCAAATCATTCAAACTCAGGTATATTTTAAT
TTAAAGAATCTTACCCACGAACTTTCAGATTTATTGCACTCGCTGAGAGA
TATGGTCTGTGTTAGTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028985XLOC_028985Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045405-proteinTCONS_00045405-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045405-exon-sc0007739-1491911889:27..160TCONS_00045405-exon-sc0007739-1491911889:27..160Clytia hemisphaericaexon
TCONS_00045405-exon-sc0007739-1510915933:27..160TCONS_00045405-exon-sc0007739-1510915933:27..160Clytia hemisphaericaexon
TCONS_00045405-exon-sc0007739-1575043694:27..160TCONS_00045405-exon-sc0007739-1575043694:27..160Clytia hemisphaericaexon
TCONS_00045405-exon-sc0007739-1491911889:307..541TCONS_00045405-exon-sc0007739-1491911889:307..541Clytia hemisphaericaexon
TCONS_00045405-exon-sc0007739-1510915933:307..541TCONS_00045405-exon-sc0007739-1510915933:307..541Clytia hemisphaericaexon
TCONS_00045405-exon-sc0007739-1575043694:307..541TCONS_00045405-exon-sc0007739-1575043694:307..541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007739supercontigsc0007739:27..541 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.443472	0.86491	1.50636	0	3.28926	2.36292	1.42538	3.20262	0.186853	0.694341	0.673944	0.443025	0.294939	0.459446	0.251818	0.405359	1.33165	3.07102	1.88568	1.97323	3.43019	2.50969	0.254238	1.38684	1.90454	1.06235	0.304044	1.29794	0	0.250747
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001881EGF-like_Ca-bd_dom
IPR000082SEA_dom
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR013032EGF-like_CS
IPR000742EGF-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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