TCONS_00045408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045408
Unique NameTCONS_00045408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045408 ID=TCONS_00045408|Name=TCONS_00045408|organism=Clytia hemisphaerica|type=transcript|length=747bp
TTGTGATAATTCTTCCGACCTTGTTGCCAGGAATTTCGGCCGTGTCCTAA
AAAAGACTGCGATTTGTTGTAAGATCTGTCTTGTCTGTCATTAGACCGGA
ATCCCGTCTATCGCTTCACTGCGGAAATCTCGAAAAAACTCGAATTCCTT
GTTCAGCAGATAATCATTTTCTCTTTTGGATGTtgtaggaaaaaagaaaa
aggttagaCAGTGTTTCCTGGCTAGTCTGTCATAGGATTCTTTCTTTTGG
TAAGACGATCGGTTGTTGTACTTCTTTATTTTTCCACCAACTTTGTTGGT
aatatcaatacttttcaagACTTTCGATACATTTTCACCGAATAGTTTTG
AATTTGAGGATTTAGTTTGTGTCGTCAAGCATTTGAATTCTGGTTTCAAC
ACAGAAACGGCATGTTTTTTCCTGATGTCAGAAATGTCAGTGTTTACACG
GCCAAGTAAGGCCACAATGTCANcaatagaccttttttcaaagaggccac
cctgttgaataattatgtagtccagcagaaaaacaatgatacacccatgc
ataattattacaatatgcatgaaacagtaacTATGCattgctgtatcatt
gtttgtatggctggactacataattattcaacagggttgcctctttgaaa
aaggtctatttgaggATTTAGTTTGTGTCGTCAAGCATTTGAATTCTGGT
TTCAACACAGAAACGGCATGTTTTTTCCTGATGTCAGAAATGTCAGT
Run BLAST on NCBI

protein sequence of TCONS_00045408-protein

>TCONS_00045408-protein ID=TCONS_00045408-protein|Name=TCONS_00045408-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MHSYCFMHIVIIMHGCIIVFLLDYIIIQQGGLFEKRSIXDIVALLGRVNT
DISDIRKKHAVSVLKPEFKCLTTQTKSSNSKLFGENVSKVLKSIDITNKV
GGKIKKYNNRSSYQKKESYDRLARKHCLTFFFFPTTSKRENDYLLNKEFE
FFRDFRSEAIDGIPV
Run BLAST on NCBI

transcript from alignment at sc0007747:2..748

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045408 ID=TCONS_00045408|Name=TCONS_00045408|organism=Clytia hemisphaerica|type=transcript|length=747bp|location=Sequence derived from alignment at sc0007747:2..748 (Clytia hemisphaerica)
ACTGACATTTCTGACATCAGGAAAAAACATGCCGTTTCTGTGTTGAAACC
AGAATTCAAATGCTTGACGACACAAACTAAATcctcaaatagaccttttt
caaagaggcaaccctgttgaataattatgtagtccagccatacaaacaat
gatacagcaatGCATAgttactgtttcatgcatattgtaataattatgca
tgggtgtatcattgtttttctgctggactacataattattcaacagggtg
gcctctttgaaaaaaggtctattgNTGACATTGTGGCCTTACTTGGCCGT
GTAAACACTGACATTTCTGACATCAGGAAAAAACATGCCGTTTCTGTGTT
GAAACCAGAATTCAAATGCTTGACGACACAAACTAAATCCTCAAATTCAA
AACTATTCGGTGAAAATGTATCGAAAGTcttgaaaagtattgatattACC
AACAAAGTTGGTGGAAAAATAAAGAAGTACAACAACCGATCGTCTTACCA
AAAGAAAGAATCCTATGACAGACTAGCCAGGAAACACTGtctaacctttt
tcttttttcctacaACATCCAAAAGAGAAAATGATTATCTGCTGAACAAG
GAATTCGAGTTTTTTCGAGATTTCCGCAGTGAAGCGATAGACGGGATTCC
GGTCTAATGACAGACAAGACAGATCTTACAACAAATCGCAGTCTTTTTTA
GGACACGGCCGAAATTCCTGGCAACAAGGTCGGAAGAATTATCACAA

Coding sequence (CDS) from alignment at sc0007747:2..748

>TCONS_00045408 ID=TCONS_00045408|Name=TCONS_00045408|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0007747:2..748 (Clytia hemisphaerica)
atGCATAgttactgtttcatgcatattgtaataattatgcatgggtgtat
cattgtttttctgctggactacataattattcaacagggtggcctctttg
aaaaaaggtctattgNTGACATTGTGGCCTTACTTGGCCGTGTAAACACT
GACATTTCTGACATCAGGAAAAAACATGCCGTTTCTGTGTTGAAACCAGA
ATTCAAATGCTTGACGACACAAACTAAATCCTCAAATTCAAAACTATTCG
GTGAAAATGTATCGAAAGTcttgaaaagtattgatattACCAACAAAGTT
GGTGGAAAAATAAAGAAGTACAACAACCGATCGTCTTACCAAAAGAAAGA
ATCCTATGACAGACTAGCCAGGAAACACTGtctaacctttttcttttttc
ctacaACATCCAAAAGAGAAAATGATTATCTGCTGAACAAGGAATTCGAG
TTTTTTCGAGATTTCCGCAGTGAAGCGATAGACGGGATTCCGGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028988XLOC_028988Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045408-proteinTCONS_00045408-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045408-exon-sc0007747-1491911889:2..748TCONS_00045408-exon-sc0007747-1491911889:2..748Clytia hemisphaericaexon
TCONS_00045408-exon-sc0007747-1510915933:2..748TCONS_00045408-exon-sc0007747-1510915933:2..748Clytia hemisphaericaexon
TCONS_00045408-exon-sc0007747-1575043694:2..748TCONS_00045408-exon-sc0007747-1575043694:2..748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007747supercontigsc0007747:2..748 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.36079	2.30592	4.46343	4.2262	4.84907	3.3081	4.74812	4.16838	5.81927	5.57148	3.88985	6.92079	4.80531	5.96275	1.06153	3.18503	2.21652	2.79001	2.77122	2.79063	3.59507	3.41557	1.87479	2.22253	5.57165	8.12661	6.1781	3.70135	3.14161	3.42715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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