TCONS_00045422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045422
Unique NameTCONS_00045422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045422 ID=TCONS_00045422|Name=TCONS_00045422|organism=Clytia hemisphaerica|type=transcript|length=545bp
TCGCTGATGGTTACATACATTATTGTGATAATTATGCTCCATCAGACTTT
AGAAGCTACAAATGCGAAGCACAAATAGAACATTTTATCAAGGTTGTTAT
ATCACGTTGGACAGAATTCAGTGAGACAAATTCATTGATAAATAAACCAT
TCCCAAGTGATAAAAATTGGGCAATTTGGCGTTGGAATAAAGGTCGTTAT
TTCGTATGAATTGTCTTAATATTTCTATAGCTACACGAGTACCAGACAGG
ACCTGACTGGGGCACTGAGGTCTtcgttttctttggtttttgagGGGGGT
AAACACTTCTACAAGGTAGTCTACTTGTAGGGTGTATTTTTCTTTGGGTT
GGGCGGTAGCTCTTCCATGATCGCTGGTTCTGTTGTAGCATTGCGTCTCT
TCGAGTCTCTGGTGGTAGTTTTGAATATTAGGGTTTTTTCTTAGGAAAGT
CAGGTCTAGAATGGTAACTCAGCTTTAGAAATCAATAACAActtaaacat
caatttatatttttacttgTTATGTCcaagctttgaaattttttc
Run BLAST on NCBI

transcript from alignment at sc0007776:65..737-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045422 ID=TCONS_00045422|Name=TCONS_00045422|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at sc0007776:65..737- (Clytia hemisphaerica)
TCGCTGATGGTTACATACATTATTGTGATAATTATGCTCCATCAGACTTT
AGAAGCTACAAATGCGAAGCACAAATAGAACATTTTATCAAGGTTGTTAT
ATCACGTTGGACAGAATTCAGTGAGACAAATTCATTGATAAATAAACCAT
TCCCAAGTGATAAAAATTGGGCAATTTGGCGTTGGAATAAAGGTCTTTAT
TTCGGATGAATTGCCTAAATATTTCTATAGCTACACAAGTACCAGACAGG
ACCTGACTGGGGCACTGAGGTCTTCGTTTTCTTTTGTTTTTANATTGGGC
AATTTGGCGTTTTAATAAAGGTCGTTATTTCGTATGAATTGTCTTAATAT
TTCTATAGCTACACGAGTACCAGACAGGACCTGACTGGGGCACTGAGGTC
TTCGTTTTCTTTGGTTTTTGAGGGGGGTAAACACTTCTACAAGGTAGTCT
ACTTGTAGGGTGTATTTTTCTTTGGGTTGGGCGGTAGCTCTTCCATGATC
GCTGGTTCTGTTGTAGCATTGCGTCTCTTCGAGTCTCTGGTGGTAGTTTT
GAATATTAGGGTTTTTTCTTAGGAAAGTCAGGTCTAGAATGGTAACTCAG
CTTTAGAAATCAATAACAACTTAAACATCAATTTATATTTTTACTTGTTA
TGTCCAAGCTTTGAAATTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029000XLOC_029000Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045422-exon-sc0007776-1575043694:546..737TCONS_00045422-exon-sc0007776-1575043694:546..737Clytia hemisphaericaexon
TCONS_00045422-exon-sc0007776-1575043694:65..417TCONS_00045422-exon-sc0007776-1575043694:65..417Clytia hemisphaericaexon
TCONS_00045422-exon-sc0007776-1510915933:546..737TCONS_00045422-exon-sc0007776-1510915933:546..737Clytia hemisphaericaexon
TCONS_00045422-exon-sc0007776-1510915933:65..417TCONS_00045422-exon-sc0007776-1510915933:65..417Clytia hemisphaericaexon
TCONS_00045422-exon-sc0007776-1491911889:546..737TCONS_00045422-exon-sc0007776-1491911889:546..737Clytia hemisphaericaexon
TCONS_00045422-exon-sc0007776-1491911889:65..417TCONS_00045422-exon-sc0007776-1491911889:65..417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007776supercontigsc0007776:65..737 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06071	2.37208	1.58853	1.84753	77.8851	61.3874	8.82297	9.15693	2.50506	3.74023	2.71426	1.21726	0.491565	0.599768	0.479653	2.19202	4.15564	4.2757	0	0	3.09057	1.37636	3.33296	4.94725	4.87163	7.2997	0.481821	0.364938	4.18649	4.34037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top