TCONS_00045435 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045435
Unique NameTCONS_00045435
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045435 ID=TCONS_00045435|Name=TCONS_00045435|organism=Clytia hemisphaerica|type=transcript|length=569bp
cctctatacaataaaaaaagaatgaacaaaaaatttaaatcctgaagctc
ataatatctcgacaaacctgtatacttttttttggtgcacccggtataaa
aCCTTGCGGATTGAATTACGTCGAAGAAATACATCattcatttttgtcat
tttttgttaGGTTCACCATCACTGCACCAGGTCTCGGTAAAGTCGAGGTG
GAAGTTGAATTGATCTGTGAATGTGAATGTGAAAAGAGTGGAGAAGACAA
CTCGGCCAAGTGTACCAACCTTGGAACCTACAAATGCGGAATCTGTTATT
GTAACCCTGGTCGATTTGGAGAAATATGCGAATGTAATGAACAGGCACAA
GCTGATGATAGCAAATGTAAACAAGCCAACTCCACGAATCCTGACGTTGT
TTGCAGTAATGCTGGCTCCTGCGTTTGTGGAAAATGTGTATGCAACAAAC
GAGATAACCCTGATGAAAAGATTTCTGGCAAATATTGTGAATGTAACAAT
TACGGGTGTGATCGTTATGACGGCAAACTATGTGGAGGTAAAGATAATGT
TGCCATGGTTTTTGCCCCA
Run BLAST on NCBI

transcript from alignment at sc0007816:20..711+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045435 ID=TCONS_00045435|Name=TCONS_00045435|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0007816:20..711+ (Clytia hemisphaerica)
cctctatacaataaaaaaagaatgaacaaaaaatttaaatcctgaagctc
ataatatctcgacaaacctgtatacttttttttggtgcacccggtataaa
aCCTTGCGGATTGAATTACGTCGAAGAAATACATCattcatttttgtcat
tttttgttaGGTTCACCATCACTGCACCAGGTCTCGGTAAAGTCGAGGTG
GAAGTTGAATTGATCTGTGAATGTGAATGTGAAAAGAGTGGAGAAGACAA
CTCGGCCAAGTGTACCAACCTTGGAACCTACAAATGCGGAATCTGTTATT
GTAACCCTGGTCGATTTGGAGAAATATGCGAATGTAATGAACAGGCACAA
GCTGATGATAGCAAATGTAAACAAGCCAACTCCACGAATCCTGACGTTGT
TTGCAGTAATGCTGGCTCCTGCGTTTGTGGAAAATGTGTATGCAACAAAC
GAGATGTTCGtattcaatttttgacattttttcgtTGAAGTTAAATTTTA
TTATACCTTTTAAGCAAATCGTTTCTTTTACGTCTTTAAGCATTCCGGGT
TGAGAAATCGCTATTTTTCTCGTTTCAGAACCCTGATGAAAAGATTTCTG
GCAAATATTGTGAATGTAACAATTACGGGTGTGATCGTTATGACGGCAAA
CTATGTGGAGGTAAAGATAATGTTGCCATGGTTTTTGCCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029013XLOC_029013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045435-exon-sc0007816-1491911889:20..474TCONS_00045435-exon-sc0007816-1491911889:20..474Clytia hemisphaericaexon
TCONS_00045435-exon-sc0007816-1510915933:20..474TCONS_00045435-exon-sc0007816-1510915933:20..474Clytia hemisphaericaexon
TCONS_00045435-exon-sc0007816-1575043694:20..474TCONS_00045435-exon-sc0007816-1575043694:20..474Clytia hemisphaericaexon
TCONS_00045435-exon-sc0007816-1491911889:598..711TCONS_00045435-exon-sc0007816-1491911889:598..711Clytia hemisphaericaexon
TCONS_00045435-exon-sc0007816-1510915933:598..711TCONS_00045435-exon-sc0007816-1510915933:598..711Clytia hemisphaericaexon
TCONS_00045435-exon-sc0007816-1575043694:598..711TCONS_00045435-exon-sc0007816-1575043694:598..711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007816supercontigsc0007816:20..711 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.7277	59.0206	149.466	164.117	261.13	202.363	220.79	242.302	125.612	160.524	113.764	86.972	99.6669	107.685	90.2689	98.5727	152.907	177.882	90.2795	115.964	114.439	119.214	91.2424	107.404	135.2	141.166	470.19	453.017	458.086	507.779
Blast
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BLAST of TCONS_00045435 vs. Swiss-Prot (Human)
Match: ITB1 (Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.746e-22
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:  273 GTYKCGICYCNPGRFGEICECNEQ---AQADDSKCKQANSTNPDVVCSNAGSCVCGKCVCNKRDNPDEKISGKYCECNNYGCDRYDGKLCGG 539
            GT++CG C CN GR G  CEC+     ++  D+ C++ NS+    +CSN G CVCG+CVC KRDN +E  SGK+CEC+N+ CDR +G +CGG
Sbjct:  482 GTFECGACRCNEGRVGRHCECSTDEVNSEDMDAYCRKENSSE---ICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGLICGG 570
The following BLAST results are available for this feature:
BLAST of TCONS_00045435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB16.746e-2251.09Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2[more]
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