TCONS_00045453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045453
Unique NameTCONS_00045453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045453 ID=TCONS_00045453|Name=TCONS_00045453|organism=Clytia hemisphaerica|type=transcript|length=522bp
aattaaaaaaaaagtaacatACCTGTATGTAGGAAAATGGAAATGGAAGG
AAATGTTTACCCAACAGCAGCTGAGAAATTTGGTTGACTTCAGCAATAAA
CTtgatattcttctttttctttaggCCTTGACAGCTTgagaatttcttct
ttttcgttgGAAGATGAACTTGGATTTCTATGGAGGCTCTTCCAGTGTTT
TTACTTTGAAGCCGCTatattgacattttccaaaTATGGAGTAAGTATAG
CCATATAAGGAAAAAGATTAGCTTCACGGCTAGAAATCCGTAGAGTTTCT
TAGCTAGTTACATCTTCCGTAAAAGCGCGGGCTATAAAATATACGGTCTA
TATAGCCATATAAGGAAAAAGATTAGCTTCACGGCTAGAAATCCGTGGAG
TTTCTTAGCTAGTTATATCTTCCGTAAAAGCGCGGGCTATAAAATCTACG
GTCTATCTCGTTGCTATGTGAacggatttaaagaaaaatggcggattccc
aatataaacaaaaacacaAGGA
Run BLAST on NCBI

transcript from alignment at sc0007877:28..549

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045453 ID=TCONS_00045453|Name=TCONS_00045453|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0007877:28..549 (Clytia hemisphaerica)
TCCTtgtgtttttgtttatattgggaatccgccatttttctttaaatccg
tTCACATAGCAACGAGATAGACCGTAGATTTTATAGCCCGCGCTTTTACG
GAAGATATAACTAGCTAAGAAACTCCACGGATTTCTAGCCGTGAAGCTAA
TCTTTTTCCTTATATGGCTATATAGACCGTATATTTTATAGCCCGCGCTT
TTACGGAAGATGTAACTAGCTAAGAAACTCTACGGATTTCTAGCCGTGAA
GCTAATCTTTTTCCTTATATGGCTATACTTACTCCATAtttggaaaatgt
caatatAGCGGCTTCAAAGTAAAAACACTGGAAGAGCCTCCATAGAAATC
CAAGTTCATCTTCcaacgaaaaagaagaaattctcAAGCTGTCAAGGcct
aaagaaaaagaagaatatcaAGTTTATTGCTGAAGTCAACCAAATTTCTC
AGCTGCTGTTGGGTAAACATTTCCTTCCATTTCCATTTTCCTACATACAG
GTatgttactttttttttaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029031XLOC_029031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045453-exon-sc0007877-1491911889:28..549TCONS_00045453-exon-sc0007877-1491911889:28..549Clytia hemisphaericaexon
TCONS_00045453-exon-sc0007877-1510915933:28..549TCONS_00045453-exon-sc0007877-1510915933:28..549Clytia hemisphaericaexon
TCONS_00045453-exon-sc0007877-1575043694:28..549TCONS_00045453-exon-sc0007877-1575043694:28..549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007877supercontigsc0007877:28..549 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.36017	1.54744	1.66839	0.502234	0.458566	0.483153	0.291452	0.272854	0.0955157	0.236623	0.114836	0.377444	0.150768	0.313147	0.514899	0.345354	0.595626	0.523284	0.240982	0	1.2055	0.641454	0.389886	0.118154	0.121696	0	1.3988	0.331741	0.37742	0.640886
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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