TCONS_00045485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045485
Unique NameTCONS_00045485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045485 ID=TCONS_00045485|Name=TCONS_00045485|organism=Clytia hemisphaerica|type=transcript|length=623bp
GGCAAATGTCAAAAGGTCTTCACATGTCAACATCCGAGCCACGAGAAGTA
CACAATGAAGAAGCACATTCTCGTTTTCAACGACCACAAGTCAGATCCCG
GCAACCAAGAAGTACTGGAACAATTCAAATTGCGATGCATTGTCAAACGA
CCCAACATCccagaattttcaaaaacgatATCGAACTACTACACGtttca
atcttttccaatcCGTCCACAAAATGACGACTCAGCTTCAGGTATATATC
AGCTTCAACAAATCATCATCAANACCCAACATCccagaattttcaaaaac
gatATCGAACTACTACACGtttcaatcttttccaatcCGTCCACAAAATG
ACGACTCAGCTTCAGGTATATATCAGCTTCAACAAATCATCATCAACTCA
AAATCTTACCTGATCTTCTACGATTCTGGGTGCAGCGATTTTGTTGTACG
TGACCACGCGATCGATCAATTGGAATCGAGAGCCCGACTTCAAGAAAAGG
AACCTATCAAGCTTGGTGGTGTTGGCGACGTGTCAACACTGTCATCCAAG
GGCATCTACAGTATCGATCTACCAACCTTTGACGGCTCAAATGTGACACT
CACCGGTGTCGCTCTCAAGAAGA
Run BLAST on NCBI

protein sequence of TCONS_00045485-protein

>TCONS_00045485-protein ID=TCONS_00045485-protein|Name=TCONS_00045485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MTTQLQVYISFNKSSSXPNIPEFSKTISNYYTFQSFPIRPQNDDSASGIY
QLQQIIINSKSYLIFYDSGCSDFVVRDHAIDQLESRARLQEKEPIKLGGV
GDVSTLSSKGIYSIDLPTFDGSNVTLTGVALKK
Run BLAST on NCBI

transcript from alignment at sc0008016:1..623

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045485 ID=TCONS_00045485|Name=TCONS_00045485|organism=Clytia hemisphaerica|type=transcript|length=623bp|location=Sequence derived from alignment at sc0008016:1..623 (Clytia hemisphaerica)
TCTTCTTGAGAGCGACACCGGTGAGTGTCACATTTGAGCCGTCAAAGGTT
GGTAGATCGATACTGTAGATGCCCTTGGATGACAGTGTTGACACGTCGCC
AACACCACCAAGCTTGATAGGTTCCTTTTCTTGAAGTCGGGCTCTCGATT
CCAATTGATCGATCGCGTGGTCACGTACAACAAAATCGCTGCACCCAGAA
TCGTAGAAGATCAGGTAAGATTTTGAGTTGATGATGATTTGTTGAAGCTG
ATATATACCTGAAGCTGAGTCGTCATTTTGTGGACGgattggaaaagatt
gaaaCGTGTAGTAGTTCGATatcgtttttgaaaattctggGATGTTGGGT
NTTGATGATGATTTGTTGAAGCTGATATATACCTGAAGCTGAGTCGTCAT
TTTGTGGACGgattggaaaagattgaaaCGTGTAGTAGTTCGATatcgtt
tttgaaaattctggGATGTTGGGTCGTTTGACAATGCATCGCAATTTGAA
TTGTTCCAGTACTTCTTGGTTGCCGGGATCTGACTTGTGGTCGTTGAAAA
CGAGAATGTGCTTCTTCATTGTGTACTTCTCGTGGCTCGGATGTTGACAT
GTGAAGACCTTTTGACATTTGCC

Coding sequence (CDS) from alignment at sc0008016:1..623

>TCONS_00045485 ID=TCONS_00045485|Name=TCONS_00045485|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0008016:1..623 (Clytia hemisphaerica)
CTTCTTGAGAGCGACACCGGTGAGTGTCACATTTGAGCCGTCAAAGGTTG
GTAGATCGATACTGTAGATGCCCTTGGATGACAGTGTTGACACGTCGCCA
ACACCACCAAGCTTGATAGGTTCCTTTTCTTGAAGTCGGGCTCTCGATTC
CAATTGATCGATCGCGTGGTCACGTACAACAAAATCGCTGCACCCAGAAT
CGTAGAAGATCAGGTAAGATTTTGAGTTGATGATGATTTGTTGAAGCTGA
TATATACCTGAAGCTGAGTCGTCATTTTGTGGACGgattggaaaagattg
aaaCGTGTAGTAGTTCGATatcgtttttgaaaattctggGATGTTGGGTN
TTGATGATGATTTGTTGAAGCTGATATATACCTGAAGCTGAGTCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029062XLOC_029062Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045485-proteinTCONS_00045485-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045485-exon-sc0008016-1491911889:1..623TCONS_00045485-exon-sc0008016-1491911889:1..623Clytia hemisphaericaexon
TCONS_00045485-exon-sc0008016-1510915933:1..623TCONS_00045485-exon-sc0008016-1510915933:1..623Clytia hemisphaericaexon
TCONS_00045485-exon-sc0008016-1575043694:1..623TCONS_00045485-exon-sc0008016-1575043694:1..623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008016supercontigsc0008016:1..623 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54805	2.53038	0.744528	1.18275	1.20551	1.46113	1.16429	1.08473	0.505495	1.92756	0.694564	0.539184	0.759947	0.473503	0.0973209	0.261101	0.321655	0.0659371	0	0.571951	0.0828548	0.121241	0.196512	0.160893	0.92007	1.1496	0.47002	0.627022	0.389974	0.193814
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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