TCONS_00045528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045528
Unique NameTCONS_00045528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045528 ID=TCONS_00045528|Name=TCONS_00045528|organism=Clytia hemisphaerica|type=transcript|length=568bp
GTCAACCTTCCAATGCACGATGGTGAGATCATTTCTTTAATTGGTATCTG
CCTCGACAGAATCACCTCTACCTTCCCTTACTATCCATTAATTGACGTTG
AGCAAGAGATTCATCAAGACTACAAGAACAACCATCCTCAAGGATCGAGA
GAATTGCCAAAGCTCCCTCCTGCAGTTGGTGGCGACACACATCTCATGTT
TGGCATCAAGTACCTTCGTTACTTTCCAAAGCTCGTTCATCAGATGGAAT
CAGGGTTATCGTTGTTCGAATCACCCTTCCTCAATTCAGATGGTGGTGGA
CGTGGAGTAGTTGGTGGTCCACACAAGGTTTTCACTCAAATCCATGATGG
ATACTTCACAACTCAATCATTCTTCATCAATCGTGGACCCAATCATTTCA
ACAACGAAGTTCCACTCCTTGGCTACTACAGCGACTTTTCTCAAGCAATT
GACTCCAGCGACACTCAAGCTCATCTCACATCACGACAGCGTCTCTTCGA
GCTAGCAGAGACAACCGGAAGTGAAATCACCTACCGTTGCCCAGTATGCA
GAACCTGCAACCAATGCA
Run BLAST on NCBI

protein sequence of TCONS_00045528-protein

>TCONS_00045528-protein ID=TCONS_00045528-protein|Name=TCONS_00045528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
VNLPMHDGEIISLIGICLDRITSTFPYYPLIDVEQEIHQDYKNNHPQGSR
ELPKLPPAVGGDTHLMFGIKYLRYFPKLVHQMESGLSLFESPFLNSDGGG
RGVVGGPHKVFTQIHDGYFTTQSFFINRGPNHFNNEVPLLGYYSDFSQAI
DSSDTQAHLTSRQRLFELAETTGSEITYRCPVCRTCNQC
Run BLAST on NCBI

transcript from alignment at sc0008195:1..568

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045528 ID=TCONS_00045528|Name=TCONS_00045528|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0008195:1..568 (Clytia hemisphaerica)
TGCATTGGTTGCAGGTTCTGCATACTGGGCAACGGTAGGTGATTTCACTT
CCGGTTGTCTCTGCTAGCTCGAAGAGACGCTGTCGTGATGTGAGATGAGC
TTGAGTGTCGCTGGAGTCAATTGCTTGAGAAAAGTCGCTGTAGTAGCCAA
GGAGTGGAACTTCGTTGTTGAAATGATTGGGTCCACGATTGATGAAGAAT
GATTGAGTTGTGAAGTATCCATCATGGATTTGAGTGAAAACCTTGTGTGG
ACCACCAACTACTCCACGTCCACCACCATCTGAATTGAGGAAGGGTGATT
CGAACAACGATAACCCTGATTCCATCTGATGAACGAGCTTTGGAAAGTAA
CGAAGGTACTTGATGCCAAACATGAGATGTGTGTCGCCACCAACTGCAGG
AGGGAGCTTTGGCAATTCTCTCGATCCTTGAGGATGGTTGTTCTTGTAGT
CTTGATGAATCTCTTGCTCAACGTCAATTAATGGATAGTAAGGGAAGGTA
GAGGTGATTCTGTCGAGGCAGATACCAATTAAAGAAATGATCTCACCATC
GTGCATTGGAAGGTTGAC

Coding sequence (CDS) from alignment at sc0008195:1..568

>TCONS_00045528 ID=TCONS_00045528|Name=TCONS_00045528|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0008195:1..568 (Clytia hemisphaerica)
GCATTGGTTGCAGGTTCTGCATACTGGGCAACGGTAGGTGATTTCACTTC
CGGTTGTCTCTGCTAGCTCGAAGAGACGCTGTCGTGATGTGAGATGAGCT
TGAGTGTCGCTGGAGTCAATTGCTTGAGAAAAGTCGCTGTAGTAGCCAAG
GAGTGGAACTTCGTTGTTGAAATGATTGGGTCCACGATTGATGAAGAATG
ATTGAGTTGTGAAGTATCCATCATGGATTTGAGTGAAAACCTTGTGTGGA
CCACCAACTACTCCACGTCCACCACCATCTGAATTGAGGAAGGGTGATTC
GAACAACGATAACCCTGATTCCATCTGATGAACGAGCTTTGGAAAGTAAC
GAAGGTACTTGATGCCAAACATGAGATGTGTGTCGCCACCAACTGCAGGA
GGGAGCTTTGGCAATTCTCTCGATCCTTGAGGATGGTTGTTCTTGTAGTC
TTGATGAATCTCTTGCTCAACGTCAATTAATGGATAGTAAGGGAAGGTAG
AGGTGATTCTGTCGAGGCAGATACCAATTAAAGAAATGATCTCACCATCG
TGCATTGGAAGGTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029105XLOC_029105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045528-exon-sc0008195-1491911889:1..568TCONS_00045528-exon-sc0008195-1491911889:1..568Clytia hemisphaericaexon
TCONS_00045528-exon-sc0008195-1510915933:1..568TCONS_00045528-exon-sc0008195-1510915933:1..568Clytia hemisphaericaexon
TCONS_00045528-exon-sc0008195-1575043694:1..568TCONS_00045528-exon-sc0008195-1575043694:1..568Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045528-proteinTCONS_00045528-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008195supercontigsc0008195:1..568 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.64472	3.66201	1.6784	0.875761	1.46596	1.15842	2.28696	2.8547	0.666215	1.85673	2.20268	1.38214	0.985869	1.56988	0.280577	1.14419	0.89024	0.912467	0.525259	0.989363	1.05103	1.25834	0.793166	0.618088	1.90985	2.17797	0.406521	0	0.548434	0.67052
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top